PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1253

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 145aa MW: 16281.3 Da PI: 5.3412

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1253	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	29.1	2e-09	45	63	3	21
-SS-EEEEEEE--TT-SS- CS WRKY 3 DgynWrKYGqKevkgsefp 21 D ++WrKYGqK++kgs++p Gh_D12G1253 45 DSWSWRKYGQKPIKGSPYP 63 99***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.3E-8	38	63	IPR003657	WRKY domain
SuperFamily	SSF118290	3.79E-7	41	64	IPR003657	WRKY domain
SMART	SM00774	0.0011	43	96	IPR003657	WRKY domain
Pfam	PF03106	1.9E-5	45	63	IPR003657	WRKY domain
PROSITE profile	PS50811	11.164	45	63	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MDGSISPKQN QSQASKRRKV VERTVVTVKM GENGGKLKND GPPYDSWSWR KYGQKPIKGS 60 PYPSFPQNQE EDPFSGNLER STVGLLLDEE PVSCCSRMKA VSSSPTPKSE ENDFFDELEE 120 LPICSAFTRF MRSKFFDEGI PVVPP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM438476	1e-130	KM438476.1 Gossypium aridum WRKY105 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437960.1	3e-51	PREDICTED: probable WRKY transcription factor 65 isoform X1
Refseq	XP_012437961.1	7e-52	PREDICTED: probable WRKY transcription factor 65 isoform X2
Refseq	XP_012437962.1	7e-52	PREDICTED: probable WRKY transcription factor 65 isoform X2
Refseq	XP_012437963.1	7e-52	PREDICTED: probable WRKY transcription factor 65 isoform X2
Refseq	XP_012437964.1	7e-52	PREDICTED: probable WRKY transcription factor 65 isoform X2
TrEMBL	A0A0D2T080	2e-50	A0A0D2T080_GOSRA; Uncharacterized protein
STRING	Gorai.008G138900.1	3e-51	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15371	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	1e-09	WRKY DNA-binding protein 65