PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1283
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 120aa    MW: 13620.9 Da    PI: 10.52
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1283genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.3e-191649134
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                 C+ C+ttkTplWR gp g+k+LCnaCG++ rkk+
  Gh_D12G1283 16 CVDCKTTKTPLWRGGPAGPKSLCNACGIRLRKKK 49
                 ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.0E-171061IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.3761066IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-141059No hitNo description
Gene3DG3DSA:3.30.50.102.0E-161450IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.28E-131550No hitNo description
PfamPF003206.7E-171650IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401641IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MHILHQRQLK EENKRCVDCK TTKTPLWRGG PAGPKSLCNA CGIRLRKKKR AAVLGLNSDS  60
RNITEKYKTK TGIDDVGPSG IKIQGRDMKV HQIVEDQKWK MKLREEEQAA FLLMALSTGY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636823.18e-85PREDICTED: GATA transcription factor 15-like
TrEMBLA0A2P5X7I08e-83A0A2P5X7I0_GOSBA; Uncharacterized protein
STRINGGorai.008G142200.15e-82(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17347611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-27GATA transcription factor 15