PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1337

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 243aa MW: 25373.6 Da PI: 10.6333

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1337	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.4	2.5e-38	28	117	2	91
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaa 91 a kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ + s+ ++ns+s ++ Gh_D12G1337 28 AIKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTMSVSVRGGANSTSLSST 117 689******************************************************************888333333333322222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-33	34	121	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	34	88	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MSNSEGGANN GAIMDPQRQQ ATVNGPLAIK KPPSKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST MSVSVRGGAN STSLSSTTSS 120 PSLDHKPLLG PTPFILGKRV RSDDDNPGKY DTGGVMVGPG VVGPAGGFWA IPGRTDFGQL 180 WSFPPPAEMA AHQPAAALFV QQQQAMGEAS AARVGNYLPG HLNLLASLSG APGSSGRRGE 240 DPR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.8300	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016735788.1	1e-177	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	5e-93	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1U8NCV6	1e-176	A0A1U8NCV6_GOSHI; transcription factor TCP7-like
STRING	Gorai.008G147800.1	1e-175	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	6e-67	TCP family protein