PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1360

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 250aa MW: 28421.9 Da PI: 7.7293

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1360	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44	2.9e-14	11	60	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kr+e+ rq+ +s+ r+gilKKA ELSv +a++ +++f +tg+l ++ Gh_D12G1360 11 KRSEDPCSRQIAYSRCREGILKKAAELSVFSNADIGLLMFFPTGRLTSFA 60 799*******************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.3E-12	1	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-9	5	25	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-13	9	63	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.086	10	63	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-12	12	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-9	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-9	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MSRRCTRPVM KRSEDPCSRQ IAYSRCREGI LKKAAELSVF SNADIGLLMF FPTGRLTSFA 60 NKGRQAEALL ICFALVLFVF LPLLIPEEFL CQSLKHLKYE AEILDKIGSL EALEMKLLDL 120 SRQEYEAQDK MRCYKPDMTK ILTVQEAQYH QQVVINAIRQ IEKLKASLNA KLLENEASTS 180 KLKDVEMPGV EVKDSDFTAE ESVNSKRKRN KSEDDEKEEA GSSAVEVPCP TPHLSISFLK 240 IQTNWNLQKA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021298974.1	4e-90	agamous-like MADS-box protein AGL66 isoform X2
TrEMBL	A0A061E3M2	2e-84	A0A061E3M2_THECC; AGAMOUS-like 66 isoform 4
STRING	EOX99189	1e-83	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16598	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	6e-16	AGAMOUS-like 20