PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1406
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 1061aa    MW: 119088 Da    PI: 6.3396
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1406genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.5e-192983357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 kR   t++qle+Le+ ++ ++yps+++r+eL+ +lgL++rq ++WF+ rR k++k
  Gh_D12G1406 29 KRKMKTASQLEVLEKTYATEMYPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK 83
                 89999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-181283IPR009057Homeodomain-like
SuperFamilySSF466895.99E-162083IPR009057Homeodomain-like
PROSITE profilePS5007116.5522484IPR001356Homeobox domain
SMARTSM003891.8E-172688IPR001356Homeobox domain
CDDcd000863.75E-142783No hitNo description
PfamPF000462.0E-162983IPR001356Homeobox domain
PROSITE profilePS5082717.347551610IPR018501DDT domain
SMARTSM005713.9E-23551610IPR018501DDT domain
PfamPF027916.9E-18552607IPR018501DDT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1061 aa     Download sequence    Send to blast
METGGISGGD GGSSEGEKKK PQEGEAKVKR KMKTASQLEV LEKTYATEMY PSEATRAELS  60
VQLGLSDRQL QMWFCHRRLK DRKAAPLKRQ RKDSTSSAHL VGVAGEEMGG SEAGNEHGLG  120
GSSLLGHGLD LKRVVPRAGM TIPRYYEMPH SMAELELRAI KFAELQLGEP IRDDGPMFGM  180
EFDPLPPGAF GAPIGASTAV QQKQPGGPFE TKIYDRRDTK TVKGSVRAVC EYQFLLEQPT  240
VRTETYGRFP LSVNYGLPTD GPNARALSLA AGSSSLLGNE QEQPGYGFPG QIPNLNLLPQ  300
QSRPGHLLPT ASGEYDYVSR TNTSTNTALD ANIGSHPISA LGSPFVSSDR RVCLDDDVLR  360
KERKRKGEED RIAREIEAHE KRIRRELEKQ DMLKRKREEQ IRKEMRRHEH EKRKEEERLL  420
REKHREEERY QREQRRELER REKFLMKESI RAERLRQKEE LRKEKEAARL RAANERAIAR  480
KLAKESMEPV EDEYLELMEI ATSSQGLSLT LPLGFEALQN LDIFRDKLCE FPPKTVQLKR  540
PFSIQPWNGS EENVGNLLMV WRFLITFADV LGLWPFTLDE LVQAFHDYDP RLLGEIHVAL  600
LRSIIKDIED VARTPSTGAG ASQNSAANPG GGHPQIVEGA YAWGFDIRSW QRHLNVLTWP  660
EILRQFALSA GFGPQLKKRN IEQAYLCDGN EVSIPFEALQ STWTDDYRNS WGMKLDSSTT  720
AEELLQILTL LESSIRRDYL SSKFETTSEV LSPSNLSGHH VDYSFNLEAV PVLPWIPKTT  780
AAVALRLMEF NAAISYTLTQ GAETKRDRGA EEFMELPPSK YAFVKNHQDD ETMQTPNQVK  840
YLQKASWDDV GIGFSGSGRG EVRRRGLGVI CGGRYQRRPA NSRSGSRKRI ATAKSGRLRP  900
VVEWKSRSQR QGGRNHGRRS SRRPKVANRM VESAGEGESR KEIMGKSSRS CGMNAWNGDE  960
VALLETGTAD NGRSSESSGY KDEIRDECDY EAVDEYGGGF NGKDDDGEGS DYDIDDGEEA  1020
EIEERNLNGG YIKENSVEGV RDAADDLPYG YSTEGCSGFS E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.227990.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016735895.10.0PREDICTED: homeobox-DDT domain protein RLT2-like isoform X1
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A1U8NA780.0A0A1U8NA78_GOSHI; homeobox-DDT domain protein RLT2-like isoform X1
STRINGGorai.008G155100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96012530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.20.0Homeodomain-like transcriptional regulator