PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1425

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 296aa MW: 31563.3 Da PI: 10.3227

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1425	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.8	7.7e-38	54	155	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqq++p+i+++tgt++++as+ a++s+ +++ns s+ Gh_D12G1425 54 APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPASALaAAGASVCAQGNSVSAglhtkmglga 151 789****************************************************************9977755555555555433334444444544 PP TCP 89 ...k 89 + Gh_D12G1425 152 ctgS 155 4440 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.9E-31	59	162	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.613	60	114	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MEPKGKGKGK GSNHHPQEVP TCLTPQKAEN NKPAEIKNLQ IMIASKDDNK KQLAPKRSSN 60 KDRHKKVDGR GRRIRMPALC AARIFQLTRE LGHKSDGETI QWLLQQSEPS IIAATGTGTI 120 PASALAAAGA SVCAQGNSVS AGLHTKMGLG ACTGSKDRNN WAMLGGNLGR SQIPSGAWSS 180 SNGIGSGLVQ VSEQSTSASN FGNENSNHIH HNYGFQGLEF PNMNMGFVSF SSLLNGSNLQ 240 VPGLELGLSQ DPHFGVSNSQ AFSHFYQQIG QQRGGVRPLN QQQIVADKDN SQGSKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.13448	0.0	boll\| ovule\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00641	PBM	Transfer from Manes.12G007700	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016735920.1	0.0	PREDICTED: transcription factor TCP20-like
Refseq	XP_016735921.1	0.0	PREDICTED: transcription factor TCP20-like
Swissprot	Q9LSD5	3e-69	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A1U8NA05	0.0	A0A1U8NA05_GOSHI; transcription factor TCP20-like
STRING	Gorai.008G157300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4050	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	5e-71	TCP family protein

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]