PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1548

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HSF

Protein Properties

Length: 357aa MW: 41249.1 Da PI: 4.3976

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1548	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.4	7.4e-36	15	107	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k ye+++de+++++isw++n++sfv++d++ef+ ++Lp+yFkhsnf+SF+RQLn+YgF+k+++++ weF+++ F +g+k+ll++i Gh_D12G1548 15 FLRKCYEMVDDEATNSIISWTQNNDSFVIWDMTEFSVRLLPQYFKHSNFSSFIRQLNIYGFRKIDTDR---------WEFANDGFVRGQKDLLKNIA 102 9**************************************************************999.........****************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k + Gh_D12G1548 103 RRKYS 107 *9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.9E-55	11	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	9.0E-37	11	104	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	4.08E-35	11	104	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.9E-18	15	38	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.4E-31	15	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.9E-18	53	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	54	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.9E-18	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MVKPNETGCQ SIAPFLRKCY EMVDDEATNS IISWTQNNDS FVIWDMTEFS VRLLPQYFKH 60 SNFSSFIRQL NIYGFRKIDT DRWEFANDGF VRGQKDLLKN IARRKYSQGP EQRKSLQQQQ 120 QPENSVGSCE NNENNRLWNE VENLKTDKNA LTQELVKLGQ YQQIADNKLL LLKDRLQGME 180 KSQQQLLSFL IMAMQSPGFL VQLIQPKENN WRMTEANNML EQVSEDTEPV ASEHMIVRYQ 240 PPTIETSKPV LTPIIDSENP HESETKDFWM DIDFVKALMD ESHTPFLPPD LHDDGAWEKL 300 LANDFRGNND DDGNRDEDGS LYSGMGMEIT GSGALFEKTC SFELLLQNYE EITKSGD

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MVKPNETGCQ SIAPFLRKCY EMVDDEATNS IISWTQNNDS FVIWDMTEFS VRLLPQYFKH  60
SNFSSFIRQL NIYGFRKIDT DRWEFANDGF VRGQKDLLKN IARRKYSQGP EQRKSLQQQQ  120
QPENSVGSCE NNENNRLWNE VENLKTDKNA LTQELVKLGQ YQQIADNKLL LLKDRLQGME  180
KSQQQLLSFL IMAMQSPGFL VQLIQPKENN WRMTEANNML EQVSEDTEPV ASEHMIVRYQ  240
PPTIETSKPV LTPIIDSENP HESETKDFWM DIDFVKALMD ESHTPFLPPD LHDDGAWEKL  300
LANDFRGNND DDGNRDEDGS LYSGMGMEIT GSGALFEKTC SFELLLQNYE EITKSGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-23	2	104	16	129	Heat shock factor protein 1
5d5v_B	1e-23	2	104	16	129	Heat shock factor protein 1
5d5v_D	1e-23	2	104	16	129	Heat shock factor protein 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9214	0.0	ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR067405	0.0	KR067405.1 Gossypium hirsutum HSF24 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001314435.1	0.0	heat stress transcription factor A-8-like
Swissprot	Q9S7U5	1e-103	HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBL	A0A0M3RMA6	0.0	A0A0M3RMA6_GOSHI; HSF24
STRING	Gorai.008G170800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7045	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	1e-105	heat shock transcription factor A8

Publications ? help Back to Top
Wang J,Sun N,Deng T,Zhang L,Zuo K Genome-wide cloning, identification, classification and functional analysis of cotton heat shock transcription factors in cotton (Gossypium hirsutum). BMC Genomics, 2014. 15: p. 961 [PMID:25378022]