PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1561
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 97aa    MW: 11143.7 Da    PI: 4.5113
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1561genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.87e-102083144
                     TSSS-HHHHHHHHHHHHHTTTT.....................-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.....................tWktIartmgkgRtlkqcksrw 44
                     ++ ++++E+ l+++ +++ G +                     +W++Ia +++ gRt+++++ +w
      Gh_D12G1561 20 KLDFSEDEETLIIRMFNLVGERwvlvcvldfltkkepmlksfcRWSLIAGRIP-GRTAEEIQKYW 83
                     5789*************************************************.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.2841587IPR017877Myb-like domain
SMARTSM007176.2E-41989IPR001005SANT/Myb domain
SuperFamilySSF466899.39E-52085IPR009057Homeodomain-like
PfamPF002497.1E-82283IPR001005SANT/Myb domain
CDDcd001673.15E-62383No hitNo description
Gene3DG3DSA:1.10.10.605.7E-112385IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MADMDGSSVD SKEESTGDSK LDFSEDEETL IIRMFNLVGE RWVLVCVLDF LTKKEPMLKS  60
FCRWSLIAGR IPGRTAEEIQ KYWASRFSYN NPMPNPS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438425.16e-44PREDICTED: uncharacterized protein LOC105764416
RefseqXP_016736086.14e-44PREDICTED: MYB-like transcription factor ETC1
TrEMBLA0A0D2U1A21e-42A0A0D2U1A2_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NAJ78e-43A0A1U8NAJ7_GOSHI; MYB-like transcription factor ETC1
STRINGGorai.008G172400.12e-43(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32328194
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01380.18e-12MYB_related family protein