PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1633

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 362aa MW: 39727.1 Da PI: 9.3245

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1633	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.7e-39	105	165	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt GGa+rnvPvG+grrk k+ss Gh_D12G1633 105 PDKILPCPRCNSKETKFCYYNNYNVNQPRHFCKNCQRYWTDGGAMRNVPVGAGRRKTKSSS 165 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-29	102	162	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-31	107	163	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.696	109	163	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	111	147	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MSELNDSSSI KLFGKMIPLL TFNQDETLVL DSSNGHLLSS SNSLGAVNSN HGLPLQAPIE 60 DKEKNEEDDR GSRVPLSERK PSSLESSKNE EKSETNSQEK ALKKPDKILP CPRCNSKETK 120 FCYYNNYNVN QPRHFCKNCQ RYWTDGGAMR NVPVGAGRRK TKSSSSSLHY HHVMISEAIL 180 GAQASAANQA SGDSCVFTFG SDSSVFSLPR LPPSTLYRPG FPASFYSSPT YRPSVVPVAT 240 LSSASINQCA PNTERSSPSP TWPALGKHSR DEKGKPSADS NISERRASSN SKALRIGDDT 300 EETAKSSMLA TLRIKTKNTN SGIFDGFQSK TSDDRNYRLT TFSMLRANPA ALSRSLHFHE 360 NT

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MSELNDSSSI KLFGKMIPLL TFNQDETLVL DSSNGHLLSS SNSLGAVNSN HGLPLQAPIE  60
DKEKNEEDDR GSRVPLSERK PSSLESSKNE EKSETNSQEK ALKKPDKILP CPRCNSKETK  120
FCYYNNYNVN QPRHFCKNCQ RYWTDGGAMR NVPVGAGRRK TKSSSSSLHY HHVMISEAIL  180
GAQASAANQA SGDSCVFTFG SDSSVFSLPR LPPSTLYRPG FPASFYSSPT YRPSVVPVAT  240
LSSASINQCA PNTERSSPSP TWPALGKHSR DEKGKPSADS NISERRASSN SKALRIGDDT  300
EETAKSSMLA TLRIKTKNTN SGIFDGFQSK TSDDRNYRLT TFSMLRANPA ALSRSLHFHE  360
NT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016729568.1	0.0	PREDICTED: cyclic dof factor 1-like isoform X1
TrEMBL	A0A1U8MVK9	0.0	A0A1U8MVK9_GOSHI; cyclic dof factor 1-like isoform X1
TrEMBL	A0A2P5R823	0.0	A0A2P5R823_GOSBA; Uncharacterized protein
STRING	Gorai.008G180400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18962	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-55	cycling DOF factor 2