PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1950

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 336aa MW: 39030.6 Da PI: 9.8041

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1950	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.8	1.4e-06	189	208	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ G C+ Gd C FaHg Gh_D12G1950 189 CPAFRN-GKCQKGDACEFAHG 208 555655.*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	5.8E-4	183	209	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.338	183	210	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-5	189	211	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.4E-5	189	208	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	28	218	241	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MDSDLVRSIH TSYARRMIYY CYTKLMLKIK LFKLLERLIC FDEYEAYRKN QRRRCLRFHR 60 ETVVDKYDYG SKSIISNKEM SKGVTNPSFY EFSEQQFISS FNLARAHAEA EAEAQAQAQA 120 QAQAQALSRY NNALDEAIYG SDEFRMYAYK IKRCTRMRSH DWTECPYAHR GEKAQRRDPR 180 KIPYTAIACP AFRNGKCQKG DACEFAHGVF EYWLHPVKYR TRACNAGMFC QRKVCFFAHT 240 PDQLRSDSKF SGPFAHKGRM VMKRGGDHQL MMMMGSPSGG VEGSTSMQAQ YVEPSPPPPH 300 QLEGVSTLLK SLRALKMRED EERELNNKKN KNKSIK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Specifically expressed in embryo (at protein level). {ECO:0000269\|PubMed:9501112}.

Functional Description ? help Back to Top
Source	Description
UniProt	Embryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269\|PubMed:9501112}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616595	0.0	JX616595.1 Gossypium hirsutum clone NBRI_GE61372 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016746304.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 2-like
Swissprot	O65036	7e-70	C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBL	A0A1U8P7T1	0.0	A0A1U8P7T1_GOSHI; zinc finger CCCH domain-containing protein 2-like
STRING	Gorai.008G213800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11527	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07500.1	6e-70	C3H family protein