PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1951
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 236aa    MW: 26288.4 Da    PI: 7.5721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1951genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.13.4e-2190141155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ kl+g
  Gh_D12G1951  90 SHYRGVRRRP-WGKFAAEIRDP---NkKGARVWLGTFDTAIEAAKAYDRAAFKLRG 141
                  79********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.37E-3390150No hitNo description
SuperFamilySSF541711.5E-2390151IPR016177DNA-binding domain
PfamPF008472.5E-1590141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3291151IPR001471AP2/ERF domain
SMARTSM003804.0E-3891155IPR001471AP2/ERF domain
PROSITE profilePS5103224.64591149IPR001471AP2/ERF domain
PRINTSPR003678.7E-1492103IPR001471AP2/ERF domain
PRINTSPR003678.7E-14131151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MACSEETSAQ LELIRQHLFT DFASMETPPP FYQLSNSESS HVYSPTRLKQ SSLSQRRPSI  60
NVMIPPTSFN IGPNPVPDSA AVAVESYEKS HYRGVRRRPW GKFAAEIRDP NKKGARVWLG  120
TFDTAIEAAK AYDRAAFKLR GSKAILNFPH EAGKSNFSES GKRRRNEEEG EGEKRVSLLE  180
SKAGRREEEV TVAECGTPSN QTGIGDNEDI NEIFGGPLLS PLSSFPWFGY SRLEVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2991149563ATERF1
3gcc_A5e-2991149563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.123090.0boll
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439108.11e-175PREDICTED: ethylene-responsive transcription factor ERF105-like
RefseqXP_016746305.11e-175PREDICTED: ethylene-responsive transcription factor ERF105-like
SwissprotQ8VY905e-55EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLA0A0D2U7561e-174A0A0D2U756_GOSRA; Uncharacterized protein
TrEMBLA0A1U8P5B41e-174A0A1U8P5B4_GOSHI; ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3G1WRL81e-174A0A3G1WRL8_GOSHI; Ethylene responsive element binding factor 5-2
STRINGGorai.008G214000.11e-174(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2455234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  3. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  4. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]