PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2084
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LSD
Protein Properties Length: 146aa    MW: 15073.5 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2084genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.3e-132953125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL YP GA+sV+Ca+C++V
  Gh_D12G2084 29 CSGCRNLLLYPVGATSVCCAVCNAV 53
                 ************************9 PP
2zf-LSD146.84.9e-156892125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggC+tlL+Y rGA+sV+C++C+tV
  Gh_D12G2084 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
                 ************************9 PP
3zf-LSD141.91.7e-13106130125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Cr lL+Y +GA+sV+Ca+C++V
  Gh_D12G2084 106 CGNCRMLLMYQYGARSVKCAVCNFV 130
                  ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.104.5E-422127No hitNo description
TIGRFAMsTIGR010531.0E-122656IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-102953IPR005735Zinc finger, LSD1-type
SuperFamilySSF486951.95E-529127IPR011031Multihaem cytochrome
TIGRFAMsTIGR010538.8E-156594IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126892IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.0E-12103133IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12106130IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYTPPAA NGAQSQLVCS GCRNLLLYPV GATSVCCAVC NAVTAVPPPG  60
TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGNCR MLLMYQYGAR  120
SVKCAVCNFV TSVGGSASAA EQKFNS
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439337.11e-101PREDICTED: protein LOL1 isoform X1
RefseqXP_012439338.11e-101PREDICTED: protein LOL1 isoform X1
RefseqXP_016736673.11e-101PREDICTED: protein LOL1
RefseqXP_016736674.11e-101PREDICTED: protein LOL1
RefseqXP_017635378.11e-101PREDICTED: protein LOL1
RefseqXP_017635379.11e-101PREDICTED: protein LOL1
SwissprotQ93ZB15e-81LOL1_ARATH; Protein LOL1
TrEMBLA0A0B0PUQ32e-99A0A0B0PUQ3_GOSAR; Protein LOL1-like protein
TrEMBLA0A0D2TA042e-99A0A0D2TA04_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NFC32e-99A0A1U8NFC3_GOSHI; protein LOL1
TrEMBLA0A2P5RCK02e-99A0A2P5RCK0_GOSBA; Uncharacterized protein
STRINGGorai.008G227400.11e-100(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.35e-68lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]