PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2098
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 568aa    MW: 62883.9 Da    PI: 6.4693
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2098genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.54e-25317372156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRla 56 
                  k +++Wtp LH++Fv+av+qL G+++A+P++ilelmk++gLt+++v+SHLQ kYR++
  Gh_D12G2098 317 KSKVDWTPALHKKFVQAVDQL-GIDQAIPSRILELMKIEGLTRHNVASHLQqKYRMH 372
                  6799*****************.****************************549**86 PP
2Response_reg27.22e-10201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d++ + +  l++ le  +y +v ++ +  eal  +  +   +++ ++ i+  + +G+  +k +++++ +lp i+ +     +++ +++ +Ga 
   Gh_D12G2098  20 VLLLDEDSNSAAELKSKLEAMDY-IVYTFCNENEALSAVSSRPesFHVAIVEINTNKKNGS--FKFLETAK-DLPTIMTSNIHCISTVMKCIALGAV 112
                   789999999999***********.***************666666**************97..67777766.999*99999899************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp ++e+l++
   Gh_D12G2098 113 EFLKKPLSEEKLRN 126
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.8E-1616138No hitNo description
SuperFamilySSF521721.71E-1516134IPR011006CheY-like superfamily
PROSITE profilePS5011020.75419132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.41E-821131No hitNo description
PROSITE profilePS5129411.476314375IPR017930Myb domain
SuperFamilySSF466896.09E-15315374IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-24315375IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-22317372IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MICTTNDLSA WKDFPKGLKV LLLDEDSNSA AELKSKLEAM DYIVYTFCNE NEALSAVSSR  60
PESFHVAIVE INTNKKNGSF KFLETAKDLP TIMTSNIHCI STVMKCIALG AVEFLKKPLS  120
EEKLRNIWQH VVRKAFNAVG TDLSESVKPV EESLVSMLYL QLENGEPKDK DLDKTQDASV  180
IHENDPEPST GSDKYPAPST PQIEQGGRLS ANGDCQDHAN CSIEKESSEQ DGESKSVETT  240
SDNTIAEVTI PVGQPQGPRD TMVTEEADLV DGTKGKSTTY SQTENGVNSK NSQAVAEKPS  300
TVSGIHSSCL NKANRKKSKV DWTPALHKKF VQAVDQLGID QAIPSRILEL MKIEGLTRHN  360
VASHLQQKYR MHRKHILPKE DDRRWPQRDQ TQRSCYPHKP IIAFPPHYSN HVVPVGPLYP  420
MWGAPPYPSS IQMWGSQGYP LWQPTESWHW KPYPGVHADA WGCPVMPPPH GYSSAFTQVS  480
SYQNASVFHC SGTMDNRSGM PPNSVEHQPA EEVIDKVVKE AINKPWLPLP LGLKPPSTDT  540
VLAELSKQGI STFPPHIYGL NSSCHGTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-15317374157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016736648.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-141APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A0D2Q0120.0A0A0D2Q012_GOSRA; Uncharacterized protein
STRINGGorai.008G228800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-145ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]