PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G2117

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 424aa MW: 47583.4 Da PI: 8.3474

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G2117	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.5	3.7e-23	25	113	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wtk+e+laLi+a++e++ +lrrg+lk+ +W++vs+++ ++ g +s++qC++k+e+l+kry+++k+++ k++ + ss++ ++ l+ Gh_D12G2117 25 CWTKDETLALIDAYKEKWFALRRGNLKASDWDAVSDVVssaSDPGTVKSSVQCRHKIEKLRKRYRAEKQRSLKNSGKFSSSWDLYPLLD 113 8***********************************998899*************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.0E-21	24	115	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MSTTTSPPLP QPSSATAARR VPPPCWTKDE TLALIDAYKE KWFALRRGNL KASDWDAVSD 60 VVSSASDPGT VKSSVQCRHK IEKLRKRYRA EKQRSLKNSG KFSSSWDLYP LLDSMNFAST 120 SVAGSDDQDH SIDHKVTVFG DFCLKSNKRE NIDGNSGSNL GFDHEFRGGH NSSFNFDHKW 180 LENGGFVAKG IKKFKSDGRI GDGYGSMVDF DHSFGQDVDS LGEFPLKTLG DRSFLNVGFK 240 SKNYGCLNLN YDYDNDSKEY SIDEEMGFRA RDLGAWDSVP QGIHQKKRGR VDMNFEPGGD 300 CRGSNGDASC SRPGPERKNA GAGVKRGVDP VDEMVSSIKL LAEGFVRMEK MKMEMVKEIE 360 KMRMEMEMKH NEMILESQQK IVDAFSSALS EKKKKKKKPS LMFSNMNGNG VEEWQEDAFI 420 KKER

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MSTTTSPPLP QPSSATAARR VPPPCWTKDE TLALIDAYKE KWFALRRGNL KASDWDAVSD  60
VVSSASDPGT VKSSVQCRHK IEKLRKRYRA EKQRSLKNSG KFSSSWDLYP LLDSMNFAST  120
SVAGSDDQDH SIDHKVTVFG DFCLKSNKRE NIDGNSGSNL GFDHEFRGGH NSSFNFDHKW  180
LENGGFVAKG IKKFKSDGRI GDGYGSMVDF DHSFGQDVDS LGEFPLKTLG DRSFLNVGFK  240
SKNYGCLNLN YDYDNDSKEY SIDEEMGFRA RDLGAWDSVP QGIHQKKRGR VDMNFEPGGD  300
CRGSNGDASC SRPGPERKNA GAGVKRGVDP VDEMVSSIKL LAEGFVRMEK MKMEMVKEIE  360
KMRMEMEMKH NEMILESQQK IVDAFSSALS EKKKKKKKPS LMFSNMNGNG VEEWQEDAFI  420
KKER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	390	398	EKKKKKKKP
2	391	397	KKKKKKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.21161	1e-176	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016736625.1	0.0	PREDICTED: uncharacterized protein LOC107946701
TrEMBL	A0A1U8NC80	0.0	A0A1U8NC80_GOSHI; uncharacterized protein LOC107946701
STRING	Gorai.008G230600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-23	Trihelix family protein