PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2131
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 257aa    MW: 29605.4 Da    PI: 8.8006
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2131genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.53.9e-093581355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +kGV   + +++W A++     n  ++ ++lg++ t+eeAa a+++a++kl +
  Gh_D12G2131 35 FKGVLPLE-SHKWGARVSF---N--YRAYWLGTYYTEEEAAIAYDRAALKLLK 81
                 66664333.689**99544...2..5************************975 PP
2B354.12.9e-17152246183
                  EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  f k+lt+ dv++ +++ +p+++a ++              +g  + s+++t++d+  r W+++++y+++ + ++++kGW++Fv  n L+ gD+v+F+
  Gh_D12G2131 152 FHKELTQIDVSNADLFQIPNEYALQFlppvgnnssgigvqMG--RDSIDITFYDKYYRPWNFRYSYWGRIKVFLFAKGWRDFVIMNSLNPGDTVIFY 246
                  89*********************999***9887777765422..2899************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-153391No hitNo description
PROSITE profilePS5103214.2493489IPR001471AP2/ERF domain
SMARTSM003801.1E-93495IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-123489IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-133491IPR016177DNA-binding domain
PfamPF008471.7E-44280IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.5E-19149246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-18150246IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-17151246No hitNo description
PfamPF023625.2E-14152247IPR003340B3 DNA binding domain
SMARTSM010191.2E-6152256IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293152257IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEGSPNPNNK TTPYQKISGR CSGTDTGSRR LSTRFKGVLP LESHKWGARV SFNYRAYWLG  60
TYYTEEEAAI AYDRAALKLL KTDAPLNLPY NIYTPQEKSF QSWYSDDEIL NMIKDKTYSS  120
HFTAFLVHQS LAKKTLPGSL TNAKGLSYEM LFHKELTQID VSNADLFQIP NEYALQFLPP  180
VGNNSSGIGV QMGRDSIDIT FYDKYYRPWN FRYSYWGRIK VFLFAKGWRD FVIMNSLNPG  240
DTVIFYGCYH VDEEGQK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635830.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A1U8MTA40.0A0A1U8MTA4_GOSHI; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
STRINGGorai.008G232300.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2074046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.13e-47RAV family protein