PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G2185

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 773aa MW: 84701.4 Da PI: 5.8484

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G2185	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	328.5	1.3e-100	412	772	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++L+++Ae v +g+++ aq +Larl++++sp g p+qR+a+yf+eAL+ l+ ++ ++ pp++ + +++ ++ a+k+fsevsP+++f ++t+Nq Gh_D12G2185 412 DQLYKAAELVGTGNFSHAQLILARLNHQVSPVGMPLQRAAFYFKEALQVLLLM--NNPVSPPPPRSPTAFDVIFKMGAYKVFSEVSPLIQFVNFTCNQ 507 79***********************************************98..5556677777777789*********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 a+lea++ +r+Hi+Dfdi+ G+QW++++q+L R++g+pslRiT+++sp+ +++ el +++ L +fA+e+g++fe +v+ ++l++ ++++L + + Gh_D12G2185 508 ALLEALDDTDRIHIVDFDIGFGAQWASFMQELPMRSRGAPSLRITAFASPSMHHSIELGLMRDILMQFANEIGLSFELEVVNFDSLDQ-NPHSLPMFQ 604 ****************************************************************************86666555.566665555 PP GRAS 199 ...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 +Ea+aVn+ + + +++ + ++++++vk+lsPk+vv +q +d+n+ F +++++a++ y+ l++sl+a+ ++s++ +k+Er+l+ ++ Gh_D12G2185 605 sngNEAIAVNFPV--WSCSNRPSA----LPHLMRFVKQLSPKIVVSLDQGCDRNDLAFPQHVIHAFQSYTNLLESLDAG-NATSDAVNKIERFLFVPR 695 556****99..444434444....456*****************************************999.799*********** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i++ v + + e++ W+ + +aGF++v++s+++++qa++++++ +++g++ve++++slvl+W++r+L+s+SaWr Gh_D12G2185 696 IESSVLGRLQT----PEKMPLWSTLFASAGFTSVTFSNFTESQADCVVKRAQVRGFHVEKRQASLVLCWQQRNLISASAWR 772 *987776....9**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.614	384	752	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.6E-98	412	772	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MHFELQAKGA VELPGFASIC QQNKWIKQRE ANSFNFENSF YYNNEPEPTS VLHLRRSQSP 60 PTSASTLSSS FNGGATGSGG GVSSTGNTNT TAATIAPPET TAPNNSKEEW ASELQPIPSE 120 LDLVPGPGGS QRCNSGLEDW ETMLSESAVS LNQDHSLLRW IAGEVDDPSF GLKQLLQSGS 180 SGPNQGVDFE GNAGVGAVDQ GPASDPIGSL ISSGSGNGIS NAALNLGGFP VSGFVPNANN 240 ENEPSCSSVE LVNNSKVLGA TVGSNCNIQN PLFSSPASNF GLPVSLPILY QQQHQEEKPR 300 IFIGPQQHPQ YPNFFLPLAQ EHHLLQPLPQ RLHSGNLELS SQIPKLPFAD AGHELFTRKQ 360 QQHMGFSQGV QYVPQQQPLM VEKKRVLVPG EEMAQPQHQY QLHQQQQATL FDQLYKAAEL 420 VGTGNFSHAQ LILARLNHQV SPVGMPLQRA AFYFKEALQV LLLMNNPVSP PPPRSPTAFD 480 VIFKMGAYKV FSEVSPLIQF VNFTCNQALL EALDDTDRIH IVDFDIGFGA QWASFMQELP 540 MRSRGAPSLR ITAFASPSMH HSIELGLMRD ILMQFANEIG LSFELEVVNF DSLDQNPHSL 600 PMFQSNGNEA IAVNFPVWSC SNRPSALPHL MRFVKQLSPK IVVSLDQGCD RNDLAFPQHV 660 IHAFQSYTNL LESLDAGNAT SDAVNKIERF LFVPRIESSV LGRLQTPEKM PLWSTLFASA 720 GFTSVTFSNF TESQADCVVK RAQVRGFHVE KRQASLVLCW QQRNLISASA WRC

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MHFELQAKGA VELPGFASIC QQNKWIKQRE ANSFNFENSF YYNNEPEPTS VLHLRRSQSP  60
PTSASTLSSS FNGGATGSGG GVSSTGNTNT TAATIAPPET TAPNNSKEEW ASELQPIPSE  120
LDLVPGPGGS QRCNSGLEDW ETMLSESAVS LNQDHSLLRW IAGEVDDPSF GLKQLLQSGS  180
SGPNQGVDFE GNAGVGAVDQ GPASDPIGSL ISSGSGNGIS NAALNLGGFP VSGFVPNANN  240
ENEPSCSSVE LVNNSKVLGA TVGSNCNIQN PLFSSPASNF GLPVSLPILY QQQHQEEKPR  300
IFIGPQQHPQ YPNFFLPLAQ EHHLLQPLPQ RLHSGNLELS SQIPKLPFAD AGHELFTRKQ  360
QQHMGFSQGV QYVPQQQPLM VEKKRVLVPG EEMAQPQHQY QLHQQQQATL FDQLYKAAEL  420
VGTGNFSHAQ LILARLNHQV SPVGMPLQRA AFYFKEALQV LLLMNNPVSP PPPRSPTAFD  480
VIFKMGAYKV FSEVSPLIQF VNFTCNQALL EALDDTDRIH IVDFDIGFGA QWASFMQELP  540
MRSRGAPSLR ITAFASPSMH HSIELGLMRD ILMQFANEIG LSFELEVVNF DSLDQNPHSL  600
PMFQSNGNEA IAVNFPVWSC SNRPSALPHL MRFVKQLSPK IVVSLDQGCD RNDLAFPQHV  660
IHAFQSYTNL LESLDAGNAT SDAVNKIERF LFVPRIESSV LGRLQTPEKM PLWSTLFASA  720
GFTSVTFSNF TESQADCVVK RAQVRGFHVE KRQASLVLCW QQRNLISASA WRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-34	433	772	26	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.26215	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439544.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A0D2RL86	0.0	A0A0D2RL86_GOSRA; Uncharacterized protein
STRING	Gorai.008G238300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16534	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-111	GRAS family protein