PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2219
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 267aa    MW: 29238.1 Da    PI: 9.2966
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2219genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.51.5e-25154198145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk +e+
  Gh_D12G2219 154 DPEPGRCRRTDGKKWRCSKEAVPDHKYCERHMHRGRQRSRKLVEA 198
                  79****************************************997 PP
2QLQ44.64.3e-1685119337
          QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  FT  Qlq+L  Q l+yKy+ a++PvP +Ll++i+k
  Gh_D12G2219  85 FTVFQLQELQLQSLIYKYMEAGLPVPNHLLLPIWK 119
                  8888*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-583119IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.01784119IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.4E-1185118IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.824154198IPR014977WRC domain
PfamPF088791.8E-21155197IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEPQYTPLKI ARFADFGTLF FLYSLSLDYH ALVNLLFSFF AGIGLTNMES NMLSGGEGSP  60
PIGLGLELGR GSDHRPTGFT KSCGFTVFQL QELQLQSLIY KYMEAGLPVP NHLLLPIWKS  120
VAGSLGGLHA NPYQLYSNYL GSGPLHLEYK NGVDPEPGRC RRTDGKKWRC SKEAVPDHKY  180
CERHMHRGRQ RSRKLVEASQ ATSSGSRIIS HGNAGTNLSI SLQLDNSNTS SSGSSSNLSS  240
GFIGFSPKSV LRGSNPKSES SIQFQEI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.215390.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5864641e-153JX586464.1 Gossypium hirsutum clone NBRI_GE20296 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016736986.11e-152PREDICTED: growth-regulating factor 10-like
TrEMBLA0A0D2U8Z61e-171A0A0D2U8Z6_GOSRA; Uncharacterized protein
STRINGGorai.008G241800.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16724712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-35growth-regulating factor 2