PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2229
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 385aa    MW: 41099.2 Da    PI: 9.0077
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2229genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.13.7e-3586187294
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnsssg.. 88 
                  ++k++ ++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++         ++++ + s++ns+++  
  Gh_D12G2229  86 TAKRSYNKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEHAIIEATGTGTVPAIAVsvggtlkipTTSATNTSNNNSQIDdr 183
                  678999**********************************************************6666633333333221111111111111122221 PP

          TCP  89 .kaaksa 94 
                   k   + 
  Gh_D12G2229 184 tK---KR 187
                  11...11 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.0E-2992183IPR005333Transcription factor, TCP
PROSITE profilePS5136926.43692146IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDPSEDGGTS DLSTSTGGPN NATPTAANSI KNDENCENSA LMVMPLKEEP MEPDPDRKTH  60
PPRPTRVVPV SGQMSMQIPI PTPVTTAKRS YNKDRHTKVE GRGRRIRIPA TCAARIFQLT  120
RELGHKSDGE TVRWLLEHAE HAIIEATGTG TVPAIAVSVG GTLKIPTTSA TNTSNNNSQI  180
DDRTKKRKRP ASSEFCDVND GIPIAVAQQQ QQQQRLVTQY SGLAPVAQQA LVPVWAVGNT  240
GMMVPANAFW MIPQSTPTAS GDWLTNQRPP PQLWAFSPAL TSVCNIAARP TFSFVATTTE  300
TQAVVCDGVS TLAVSTSSTP VGATEAKKST MAPSVSSGGN GGGGTGGTAQ MLRDFSLEIY  360
GKQELQLMGR SWNHRQQQIK AASKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.97040.0boll| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272251e-172HQ527225.1 Gossypium herbaceum clone NBRI_B_2245 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016736997.10.0PREDICTED: transcription factor TCP9-like isoform X1
RefseqXP_016736998.10.0PREDICTED: transcription factor TCP9-like isoform X2
TrEMBLA0A1U8ND960.0A0A1U8ND96_GOSHI; transcription factor TCP9-like isoform X1
STRINGGorai.008G243000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17337611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-57TCP family protein