PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2242
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 311aa    MW: 34786.2 Da    PI: 5.8902
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2242genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.8e-36211122102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++lisw+e+g++f+v+++ efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++  F++g+kell++i+
   Gh_D12G2242  21 FLSKTYQLVDDPSVDDLISWNEDGSAFIVWHPAEFARDLLPRYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANACFRRGEKELLRDIH 108
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Gh_D12G2242 109 RRKI 112
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-3810104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.9E-5817110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.41E-3518110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.3E-3221110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-212144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-215971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-217284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MACGSTASAA ADSQRSLPTP FLSKTYQLVD DPSVDDLISW NEDGSAFIVW HPAEFARDLL  60
PRYFKHNNFS SFVRQLNTYG FRKIVPDRWE FANACFRRGE KELLRDIHRR KISPPAATPA  120
TVTVAVVPCE VSPTNSGDEQ VISSHSPPVA TILHRMTSCT TTPELLEENE RLRKENMLLS  180
QELTQLKGLC NNILTLMTNH ASGQLESHSI LAEGKALDLL SARDSARSTE DSGSKEVAEE  240
EDVTPKLFGV SIGVKRLRKE GEDEMQNSFQ VRQQDTEPAS KMKEEPWMGK VMIKNRGSWS  300
LVNDQTIHNA I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-262111029129Heat shock factor protein 1
5d5v_B2e-262111029129Heat shock factor protein 1
5d5v_D2e-262111029129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.30485e-55ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674070.0KR067407.1 Gossypium hirsutum HSF26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737011.10.0PREDICTED: heat stress transcription factor B-2b-like isoform X1
SwissprotQ9T0D32e-98HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A1U8NDE10.0A0A1U8NDE1_GOSHI; heat stress transcription factor B-2b-like isoform X1
STRINGGorai.008G244400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-88HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]