PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2330
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 241aa    MW: 26183.2 Da    PI: 8.464
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2330genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof66.73.8e-2114482862
       zf-Dof 28 qPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                   ryfCk+CrryWt+GG+lrn+PvGgg+rknk+ss
  Gh_D12G2330 14 GHRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSS 48
                 57******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088415.622146IPR003851Zinc finger, Dof-type
PfamPF027015.2E-151646IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-121646IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MALSLFHPWI LLNGHRYFCK TCRRYWTEGG SLRNIPVGGG SRKNKRSSTS SSSSISTSLT  60
SSKKLPGLVT PPSLSPCSTQ NPKIHDGQDL NLAFPTASQG YRSLSELVQV PLENNNKNQI  120
PSSSSSSPTT SQLSALELLT GITSRGFNSF IPMPVPDPNT VYTPGNFPMQ DFKPTLNFSL  180
DGLGNGYGSL HGVQETTGRL LFPFEDLKQV STTTDIDQHK DQGDSTGYWT GGGDLFGFLH  240
Y
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.146120.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431010.0AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439815.11e-153PREDICTED: dof zinc finger protein DOF4.6 isoform X1
TrEMBLA0A0D2Q1T91e-160A0A0D2Q1T9_GOSRA; Uncharacterized protein
STRINGGorai.008G256800.11e-161(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34332761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.43e-33Dof family protein