PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2375
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 859aa    MW: 94147.5 Da    PI: 4.6684
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2375genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.37e-5491351127
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+d++k+ePwdLp  + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s k
  Gh_D12G2375   9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-EVIPEIDVCKWEPWDLPgfSVIKSDDLEWFFFCPRDRKYPNGHRSNRATDKGYWKATGKDRTIKS-K 104
                  699************************999.99***************6447777888**************************************.8 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyr 127
                  ++l+g+kktLvfykgrapkge+t+W+mheyr
  Gh_D12G2375 105 KSLIGMKKTLVFYKGRAPKGERTNWIMHEYR 135
                  99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-625159IPR003441NAC domain
PROSITE profilePS5100557.7129159IPR003441NAC domain
PfamPF023651.4E-2710135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MEVLTMGTLP LGFRFRPTDE ELINHYLRLK INGRHSEVEV IPEIDVCKWE PWDLPGFSVI  60
KSDDLEWFFF CPRDRKYPNG HRSNRATDKG YWKATGKDRT IKSKKSLIGM KKTLVFYKGR  120
APKGERTNWI MHEYRPTTKE LDGTAPGQSA FVLCRLFHKV EERNDIVKYD EVEQTGYSPA  180
MIKSSPDDTS SDLLQDTVSS DTQAQKPDNL MQNDRITGDT SSCNSHMTSN ADYHATEETM  240
MEKYPLPGSN SNLYEPNYGE IDSKVFSPLM NSQLFEDLSF FVDSPYANDF GHDQNGFHFQ  300
DGTSEQDVSF AFLDDILSNH YDSCEESNTQ KNLVDGTEMP LFGDSFISKT PPPEISHLKE  360
NGRPADTDTE MPQLQFGTEV GARRWLGGPI DNNQSLQMKT SFQPTHTQPA LYNQEYRTRN  420
IGGLGNYSVG QGTFTDSAMG NINNLQQLTS VKNYVNSGGD LGGGIGMKTG TCQPLKQSNS  480
ENFGTLGTGI KIRTHGSQQQ PNSDIVNQGT APRRIRLMKL SCGPMKGSVG CVDDEKMMST  540
CLVEEEEVQS ALTEVTEAEA AEQTSSSDES EKNIVNQGTA PRRIHLQTKL STGAMKGSAG  600
CANGGNMTSP GLVEEEVQSA LTEVTEAEAA GLTSSSDELE KNIVNQGTAP RRIRLQTNFS  660
TRPMKGSVGC VDGGSMTSPG LVEEEVQSAL TEVTEAEAAG QTSSSDESEK NIVNQAIAPR  720
RIRLQLSTGP MNGSAGCVDG GNMTSPGLGK EEVQSALTEA TEDEATGQIS SSCETSSSDE  780
SEVENRLLKF EGSRDADESY SKPRLRVKQV DEQHSCSQKG PSLHLKAAPA LHCPNSLLVP  840
GIAIFTITLL FALFMGIWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-47916215171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.109170.0boll| ovule| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439879.10.0PREDICTED: NAC domain-containing protein 14-like isoform X2
TrEMBLA0A0D2RML10.0A0A0D2RML1_GOSRA; Uncharacterized protein
STRINGGorai.008G261400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-133NAC transcription factor-like 9