PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G2492

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 137aa MW: 15591.8 Da PI: 8.742

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G2492	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.4	1.3e-39	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaC++lrr+C++dC+++pyfp ++p++f +h+++Gasnv kll++lp + r++a++sl+ eA+ r++dPvyG+vg+i+ lqqq++ ++ +la+++ Gh_D12G2492 5 RCAACRYLRRRCPPDCIFSPYFPPNNPQRFVSIHRIYGASNVAKLLQQLPSHLRTQAADSLYLEAQYRIEDPVYGCVGLISLLQQQIHDVERQLAMTQ 102 6**********************************************************************************************999 PP DUF260 99 ee 100 +e Gh_D12G2492 103 AE 104 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.528	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.6E-40	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MNPGRCAACR YLRRRCPPDC IFSPYFPPNN PQRFVSIHRI YGASNVAKLL QQLPSHLRTQ 60 AADSLYLEAQ YRIEDPVYGC VGLISLLQQQ IHDVERQLAM TQAEIAFRAR HPQAVESNLL 120 NNVGNPSFSN QASSWFM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-40	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-40	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435764.1	2e-97	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	8e-52	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A2P5QPC5	3e-97	A0A2P5QPC5_GOSBA; Uncharacterized protein
STRING	Gorai.008G280400.1	7e-97	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	5e-43	LOB domain-containing protein 24