PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2493
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 826aa    MW: 88155.9 Da    PI: 5.8213
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2493genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.82.8e-24208261155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kp+++Wt++LH++F+ea++q+ G e+A+Pk+ile m+  gLt+e+v+SHLQkYR+
  Gh_D12G2493 208 KPKIVWTNTLHNQFLEALRQI-GLERAVPKKILERMNSTGLTRENVASHLQKYRI 261
                  799******************.********************************6 PP
2Response_reg80.17.3e-27161211107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakd 96 
                   +l+vdD+ + + ++  +l++ +y ev++++++ +al  l+ +  +Dl+++D+ mpgm+G+el k+i++e  klp+i++++ ++e+ +le l  Ga  
   Gh_D12G2493  16 ILVVDDDSTSLAIVSAMLREFRY-EVTSVKTPAAALSVLRSNPsIDLVVTDLHMPGMNGIELQKRINKEF-KLPVIIMSSDDDENVMLESLAGGAVF 110
                   89*********************.***************99999**********************9999.9************************* PP

                   EEESS--HHHH CS
  Response_reg  97 flsKpfdpeel 107
                   f++Kp+dp  l
   Gh_D12G2493 111 FIVKPVDPVGL 121
                   ******99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23009.6E-3412158No hitNo description
SuperFamilySSF521721.41E-3113130IPR011006CheY-like superfamily
SMARTSM004481.8E-2714125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.94215129IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-2216122IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.76E-2717118No hitNo description
PROSITE profilePS512949.232205264IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-24206265IPR009057Homeodomain-like
SuperFamilySSF466892.87E-17206265IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-23208261IPR006447Myb domain, plants
PfamPF002496.2E-6213260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MVSTRSVNSP AMKITILVVD DDSTSLAIVS AMLREFRYEV TSVKTPAAAL SVLRSNPSID  60
LVVTDLHMPG MNGIELQKRI NKEFKLPVII MSSDDDENVM LESLAGGAVF FIVKPVDPVG  120
LKNVWQYAVA AKKGKSLLIE DMDRESSSSS PADGKLSLGG NTKSVSSVNN EKNDPKNGSK  180
RKGASGKGRD KDDNDDESKS PPPKKTKKPK IVWTNTLHNQ FLEALRQIGL ERAVPKKILE  240
RMNSTGLTRE NVASHLQKYR IFLKRLAERG CFASKAVIDR FLKSNFAAGH PLLLKTAQEY  300
SRLEHMERLR VLASYPGLRE SLMGHSSTGS VPLFYGHPGA SSSNAAQQPL GYGQSRLLSN  360
QTNRPLFPGS GNMLNNPYLN NRLGYGNGNG IGIGIGIGTS SSVNGGGGFS SGLLNGGNSS  420
LTYPNQVQAR PDFYNAGPSS SSPFRFGSAG FHSSGSTLGN GLFGSGSSSY PSLNSSSSGS  480
TVVNGLFGSS SRSHPSLNSS SSGATLGNGL FGSSSSSYPS LNNSSYPSLN PGYTNNAANS  540
YRGMRFYEHL LNGSAPPLTG DYGSMNQTRP TGDYGSMNRT HNENINVPTM RTTPLDSLDF  600
MREFPIPPVD SSTLIQGLGT GNTRLTEINS DQLLNNVPNL GNEPRGGDGL LQDLVLESKK  660
LANKEKAGEQ SVENSDYCLP SLFPEIYPTL DELLNCDFPD PLSDEDNHPW SEEAIGQVQS  720
ELEELINNPN PAAGDGSNES NPITNKQQTG GEQVTVTHPL SNVLQVMTAP APAPAPAPAP  780
APAPALAVYN LANNANNGAP VGANSSSYED DEDFLDSLLN FNDEFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-21207267464ARR10-B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5836314e-69JX583631.1 Gossypium hirsutum clone NBRI_GE16723 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440209.10.0PREDICTED: uncharacterized protein LOC105765572 isoform X1
TrEMBLA0A0D2T8D10.0A0A0D2T8D1_GOSRA; Uncharacterized protein
STRINGGorai.008G280500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162131014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.14e-49response regulator 21