PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2499
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 441aa    MW: 48147.6 Da    PI: 8.1358
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2499genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.8e-08110131426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C+++ + G C +Gd+C+F H+
  Gh_D12G2499 110 KVCNYWVQ-GNCTFGDKCRFLHS 131
                  68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.6432248IPR000571Zinc finger, CCCH-type
SMARTSM003561.52347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7107131IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6108132IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-6109131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-7110130IPR000571Zinc finger, CCCH-type
SuperFamilySSF509783.39E-35128222IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.2E-33131433IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.3137176IPR001680WD40 repeat
PROSITE profilePS5029410.812144185IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.344144185IPR001680WD40 repeat
PRINTSPR003201.5E-5163177IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780163177IPR019775WD40 repeat, conserved site
SMARTSM003202.1E-4270307IPR001680WD40 repeat
PfamPF004000.034274307IPR001680WD40 repeat
SuperFamilySSF509783.39E-35276434IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.745277316IPR001680WD40 repeat
PROSITE profilePS5029415.847277356IPR017986WD40-repeat-containing domain
PRINTSPR003201.5E-5294308IPR020472G-protein beta WD-40 repeat
SMARTSM003200.001310347IPR001680WD40 repeat
PfamPF004000.007312346IPR001680WD40 repeat
PRINTSPR003201.5E-5334348IPR020472G-protein beta WD-40 repeat
SMARTSM0032053351394IPR001680WD40 repeat
SMARTSM0032096397433IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDLDGGAGNN KRVFNRLGTD TSKNQKVCFH WRAGKCTRFP CSFLHTEPSH PSGSAAASST  60
ANGSGAPKRF ADDSGFSGSA QRRGPNFKNN HNNSWGRMGA NNKVVRKTEK VCNYWVQGNC  120
TFGDKCRFLH SWSLGEGFSM LNHLDGHQKL LSGIVLPAGM DKLFTGSKDE TLRAWDANSG  180
QCTGVINLGG EVGCMISEGL WLFVGIPNAV KAWNTQTNQE FSLSGPAGQV YAMIVGNSLL  240
FAGTQGQSPS IIGFLQEGIL AWKFNAVTNS FEPAASLKGH TLPVVSLMVG ANRLYSGSMD  300
HSIKVWSLET LQCLQTLTDH TNVVMSLLCW DQFLLSCSLD QTIKVWVATE NGNLEVTYTH  360
NEEHGLLNLR GMHDLESKPV LLCACNDNYV RLYDLPSFSK RGKIFAKQEI RAIEVGPSGL  420
FFTGDGTGFK VWKWAEPVAT T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-151324328323Tako8
6g6n_A3e-151324328323Tako8
6g6n_B3e-151324328323Tako8
6g6n_C3e-151324328323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.213480.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6145871e-147JX614587.1 Gossypium hirsutum clone NBRI_GE58084 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737363.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X1
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A1U8NHB80.0A0A1U8NHB8_GOSHI; zinc finger CCCH domain-containing protein 48-like isoform X1
STRINGGorai.008G281100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein