PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G2641

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 361aa MW: 40810.4 Da PI: 8.2647

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G2641	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.6	7.9e-37	120	268	3	135
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg.... 88 k+drhski T+ g+RdRR+Rls+++a++fF Lqd+LG+dk+s t+eWLl qa ++i +l++ s++++ ea++ +s + Gh_D12G2641 120 SKRDRHSKINTANGPRDRRMRLSLDVAREFFGLQDMLGYDKASRTVEWLLIQARHEIMKLARARVSHNNNNsvaaaaaaEAAAVAKS------Pssts 211 69***********************************************************444442222233222112222222......12234 PP TCP 89 ..........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 +k ++++k +k + +++ la++ r+karara+ rt+ k++ ++k Gh_D12G2641 212 egevvsalegTISKGKPTEKTVKKTTFQFHPLARDLREKARARAKARTKAKNMWNQK 268 567888888655555557777888888899*****************99988866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-36	120	264	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.277	121	179	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.168	245	262	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MYPSNSNGSS EEPINDHSFF HFVTDSKQED PSFGFFNFPS PYYSQCELEQ VFQDQDHDVF 60 LHQHHDLLFH HEQNHQPLMA DSVSGTIVNV PATSAVDCTK KKSNNHNADT EVKQQKRSSS 120 KRDRHSKINT ANGPRDRRMR LSLDVAREFF GLQDMLGYDK ASRTVEWLLI QARHEIMKLA 180 RARVSHNNNN SVAAAAAAEA AAVAKSPSST SEGEVVSALE GTISKGKPTE KTVKKTTFQF 240 HPLARDLREK ARARAKARTK AKNMWNQKLC CSTDETKLSS WWSFQTGEES SIQQHHHNKK 300 INPSLQQVAA GDMIDESLAI INKWNPDSMF NCLQNSGINQ EHQITGFLPF GKPWEGYNNK 360 I

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MYPSNSNGSS EEPINDHSFF HFVTDSKQED PSFGFFNFPS PYYSQCELEQ VFQDQDHDVF  60
LHQHHDLLFH HEQNHQPLMA DSVSGTIVNV PATSAVDCTK KKSNNHNADT EVKQQKRSSS  120
KRDRHSKINT ANGPRDRRMR LSLDVAREFF GLQDMLGYDK ASRTVEWLLI QARHEIMKLA  180
RARVSHNNNN SVAAAAAAEA AAVAKSPSST SEGEVVSALE GTISKGKPTE KTVKKTTFQF  240
HPLARDLREK ARARAKARTK AKNMWNQKLC CSTDETKLSS WWSFQTGEES SIQQHHHNKK  300
INPSLQQVAA GDMIDESLAI INKWNPDSMF NCLQNSGINQ EHQITGFLPF GKPWEGYNNK  360
I

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435620.1	0.0	PREDICTED: transcription factor DICHOTOMA-like
TrEMBL	A0A0D2UBF1	0.0	A0A0D2UBF1_GOSRA; Uncharacterized protein
STRING	Gorai.008G285300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24297	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.2	4e-21	TCP family protein