PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G2767

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 281aa MW: 32492.6 Da PI: 8.1682

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G2767	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.9	1.1e-54	11	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yLk+++++k++++ ++i+evdiyk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nrat sgyWkatg+dk+++s +++ Gh_D12G2767 11 LPPGFRFHPTDEELIMFYLKNQAKSKPCPV-SIIPEVDIYKFDPWQLPDKAEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIHS-GSK 106 79**************************.89***********99999**************************************.99 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy+gr pkg+kt+W+mheyrl Gh_D12G2767 107 YVGVKKALVFYNGRPPKGVKTNWIMHEYRL 136 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-66	8	163	IPR003441	NAC domain
PROSITE profile	PS51005	61.151	11	163	IPR003441	NAC domain
Pfam	PF02365	2.7E-27	12	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MERNTSSKSD LPPGFRFHPT DEELIMFYLK NQAKSKPCPV SIIPEVDIYK FDPWQLPDKA 60 EFGENEWYFF SPRDRKYPNG VRPNRATVSG YWKATGTDKA IHSGSKYVGV KKALVFYNGR 120 PPKGVKTNWI MHEYRLSDSH KQIKKHSGSM RLDDWVLCRI YKKKNSAEKI LDHKVEESNT 180 QIDRVGYSND DSESQELLKF PKTGSYSRLL ELDYMGPVSH LLNENTYISS FDFPNTIANT 240 GIEDVEKLQL GDIPYNYSTE SGNFQVNQNG ILMNPMVYQF Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-73	2	169	11	174	NAC domain-containing protein 19
3swm_B	7e-73	2	169	11	174	NAC domain-containing protein 19
3swm_C	7e-73	2	169	11	174	NAC domain-containing protein 19
3swm_D	7e-73	2	169	11	174	NAC domain-containing protein 19
3swp_A	7e-73	2	169	11	174	NAC domain-containing protein 19
3swp_B	7e-73	2	169	11	174	NAC domain-containing protein 19
3swp_C	7e-73	2	169	11	174	NAC domain-containing protein 19
3swp_D	7e-73	2	169	11	174	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269\|PubMed:29760199}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016736202.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	K4BWV2	1e-115	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A2P5RQ95	0.0	A0A2P5RQ95_GOSBA; Uncharacterized protein
STRING	Gorai.008G179900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7707	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-114	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]