PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0031
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 209aa    MW: 22487.7 Da    PI: 4.8951
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0031genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.61.8e-42431421100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca++Cvlapyfp ++p+kfa++h++FGasn++k+l++lpe +r+da+ss+vyeA ar+rdPvyG++g +++lq+q+++l+a+la+++
  Gh_D13G0031  43 PCAACKILRRRCADKCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPECQRSDAVSSMVYEAGARIRDPVYGCAGAVFQLQKQVNELQAQLAKAQ 140
                  7***********************************************************************************************99 PP

       DUF260  99 ee 100
                  ++
  Gh_D13G0031 141 AQ 142
                  87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.83242143IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-4243140IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEYSEPIPTP TVSSSPSLSP NSSISSNSPP SPPLSPPLVV ISPCAACKIL RRRCADKCVL  60
APYFPPTEPA KFAIAHRVFG ASNIIKFLQE LPECQRSDAV SSMVYEAGAR IRDPVYGCAG  120
AVFQLQKQVN ELQAQLAKAQ AQVVNMQLQQ ANVLALLCMD MDKAPSSPPP NSPQSAVGDT  180
FITNSSYLSF MEDISNDANS GSLWEPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-414214510113LOB family transfactor Ramosa2.1
5ly0_B3e-414214510113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6169072e-49JX616907.1 Gossypium hirsutum clone NBRI_GE61864 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462233.11e-150PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR03e-77LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2P5QI441e-150A0A2P5QI44_GOSBA; Uncharacterized protein
STRINGGorai.013G002900.11e-150(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-67LOB domain-containing protein 1