PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0042
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 416aa    MW: 46098.6 Da    PI: 7.0211
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0042genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.4e-10131171545
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                  k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Gh_D13G0042 131 KILRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 171
                  6679************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.7E-8126171No hitNo description
SMARTSM003381.5E-7127190IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289129173IPR004827Basic-leucine zipper domain
CDDcd147081.92E-22131183No hitNo description
SuperFamilySSF579597.5E-7131174No hitNo description
PfamPF001708.6E-7131171IPR004827Basic-leucine zipper domain
PROSITE patternPS000360134149IPR004827Basic-leucine zipper domain
PfamPF141446.2E-33213288IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MANLYLGFTC GNADGVFNSA NASGQPFPTD RSYIGTLDKT PNSFTINPSA LRVESQGLHL  60
ERGQQTGPVS ISRGHTENWG ESDMADASPR TDISTDAETD EKNLRFDSEK LNAAVAASDS  120
SDRSKSNLDQ KILRRLAQNR EAARKSRLRK KAYVQQLESS RLKLTQLEQE LQRARQQGIF  180
ISSSGDQIHS LGGNGAMTFD VEYGRWLEEH NRQINELRMA VNSHAGDAEL RIIVDGVMAH  240
YDEIFRLKSN VAKADVFHLL SGMWKTPAER CFLWLGGFRS SELLKLLVNQ LEPLTEQQLV  300
GVSNLQQSSQ QAEDALSQGM EALQQSLSET LSTGSLGSSG STGNVANYMG QMAMAMGKLG  360
TLEGFICQAD NLRQQTLQQM HRILTTRQSA RALLAIHDYF SRLRALSSLW LARPRE
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098589700.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016723648.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_016723649.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_016723650.10.0PREDICTED: transcription factor TGA2-like isoform X1
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A1U8MDJ60.0A0A1U8MDJ6_GOSHI; transcription factor TGA2-like isoform X1
STRINGGorai.013G004400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-154TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]