PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0132
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 474aa    MW: 53782.2 Da    PI: 6.6271
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0132genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.35.2e-137454691374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cA++v++g+le+a+  L+++s+las dgd+mqR+aayf eALa r+++ +++l+kal++++ s   +see++++klf+e++P+lk++++++
  Gh_D13G0132  45 LIHLLVSCANHVAAGSLENANIGLEQISHLASTDGDTMQRIAAYFNEALAYRMLKAWPGLCKALNSTKIS--LVSEEIHVQKLFFELCPFLKLAYVIT 140
                  689*************************************************************999998..7************************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI+ea+ege++vHiiDf+  +++QW++L+q++++Rpegpp+lRiTg+++    +ke l ++++rL++ A++ ++pf+fn+ v+ +le+l+le+Lrv
  Gh_D13G0132 141 NQAIVEAMEGEKMVHIIDFNCFEPAQWINLFQTFNARPEGPPHLRITGLHE----QKEVLDHMARRLTEEAQKWDIPFQFNP-VVCKLENLDLESLRV 233
                  ***************************************************....9**************************.6888*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll...........................................................desvsles..erdevLklvks 233
                  k+gEalaV++vlqlh+ll                                                               sl+   +  ++L +++ 
  Gh_D13G0132 234 KTGEALAVSSVLQLHSLLvtddemhkwkvnspsmskidpshrvlqmnqrtlgewlkkepvhayspssdlaspsplspL---SLAPapKMGSFLTALRA 328
                  ***********************************************************************9996642...3333335778******* PP

         GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                  lsPk++v++eqe++ ++++++er++eal++y+alfd+le++++r+  er+kvE++l+g+ei+n++aceg er+erhe+lekW  rle aGF+ vpls+
  Gh_D13G0132 329 LSPKLIVITEQESNNSGSTLMERVMEALNFYAALFDCLESTVSRAPLERKKVEKMLFGEEIKNIIACEGVERKERHEKLEKWILRLELAGFGRVPLSY 426
                  ************************************************************************************************** PP

         GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  + + qa +ll++ + dgy+++ee+g+lv++W++rpL+s+SaWr
  Gh_D13G0132 427 HGMLQAGRLLQTNNYDGYKIKEENGCLVICWQERPLYSISAWR 469
                  ******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.89219449IPR005202Transcription factor GRAS
PfamPF035141.8E-13445469IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MVPEGQSFVT SSPLQFIPWM SFSPGLGSPF PWLRELKSEE RGLYLIHLLV SCANHVAAGS  60
LENANIGLEQ ISHLASTDGD TMQRIAAYFN EALAYRMLKA WPGLCKALNS TKISLVSEEI  120
HVQKLFFELC PFLKLAYVIT NQAIVEAMEG EKMVHIIDFN CFEPAQWINL FQTFNARPEG  180
PPHLRITGLH EQKEVLDHMA RRLTEEAQKW DIPFQFNPVV CKLENLDLES LRVKTGEALA  240
VSSVLQLHSL LVTDDEMHKW KVNSPSMSKI DPSHRVLQMN QRTLGEWLKK EPVHAYSPSS  300
DLASPSPLSP LSLAPAPKMG SFLTALRALS PKLIVITEQE SNNSGSTLME RVMEALNFYA  360
ALFDCLESTV SRAPLERKKV EKMLFGEEIK NIIACEGVER KERHEKLEKW ILRLELAGFG  420
RVPLSYHGML QAGRLLQTNN YDGYKIKEEN GCLVICWQER PLYSISAWRF RPYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-40454694375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462772.10.0PREDICTED: scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2P5XXY60.0A0A2P5XXY6_GOSBA; Uncharacterized protein
STRINGGorai.013G015100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]