PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0160
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 674aa    MW: 73778.8 Da    PI: 6.8664
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0160genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06269289526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C  f++ G C+ Gd C +aHg
  Gh_D13G0160 269 PCLEFRK-GACPKGDACDYAHG 289
                  8999***.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.0E-1760195IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.37E-1573154IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.22876156IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001476106IPR002110Ankyrin repeat
PfamPF136372.0E-977135No hitNo description
CDDcd002042.99E-1578193No hitNo description
SMARTSM002489.2E-4111143IPR002110Ankyrin repeat
PROSITE profilePS5008811.968111146IPR002110Ankyrin repeat
PROSITE profilePS5010312.831264291IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4264290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4269290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4295328IPR000571Zinc finger, CCCH-type
SMARTSM0035672299322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MCCGSKSELV PSNFTMEGEL QEHKIGALCK CSLLLELAAS NDLVAFKNEV EEKGLDLGEA  60
SLWYGRRIWS RKMGFEERTP LIIAAMFGSV DVLKYIIGSG KIDVNDACGT DGVTALHCAV  120
AGGSDSSVEI VKLLLDASAD ANRVDANGSK PIDLVVPALK SLSSSKRKVI ELLLKGVSGC  180
VLNEKAESEK TVLPQLFKEG SEKKEYPIDV SLPDINNGIY GTDDFRMYTF KVKPCSRAYS  240
HDWTECPFVH PGENARRRDP RKYPYSCVPC LEFRKGACPK GDACDYAHGI FESWLHPSQY  300
RTRLCKDEIA CARKVCFFAH KLEELRPVNT STGSAMPSPR SAVINAADMA NLSPLALGSS  360
ALPLPTTSTP PMSPLAVASS PKSGGLWHKQ VNLTPPTLQL PGSRLKTAFN ARDFDLEMQL  420
LALENHASQL QQQQLMDEIS SLSSPSCWTK EYNRLEDLKP TKLDDAFGSL DPSLLSPLKG  480
LSIESVTQTQ SQSRQNMNQL RASYPTNLSS SPVRKPSAFG FDSSAAVAAA VMNSRSSGFA  540
KRSQSFIDRG AMIGRAGLTT SANSKTMMSS NISDWSSPDG KLDWGIQGDE LNKLRKSVSF  600
GFRNNNPTTT ETTNMMPTDA DEPDVSWVHS IVKDAAPTEA RLHQQQRYSL GKGVRETLPP  660
WMEQMYIEQE QMVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.56130.0boll| embryo| leaf| ovule| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704957.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform X1
RefseqXP_016704958.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform X2
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A1U8KR640.0A0A1U8KR64_GOSHI; zinc finger CCCH domain-containing protein 29-like isoform X1
TrEMBLA0A1U8KVA80.0A0A1U8KVA8_GOSHI; zinc finger CCCH domain-containing protein 29-like isoform X2
STRINGGorai.013G017600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein