PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0192
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GeBP
Protein Properties Length: 369aa    MW: 40262.3 Da    PI: 5.5045
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0192genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573122.91.6e-38145242298
       DUF573   2 lfqrlws.eeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                  lfqrl+s e+Dei+lL G++d+ ak+g++p +d+++fyefvkksi+ +vsk ql++KirrLKkKfk +  k ++g++p+fsk+h+q++felsk+iWg+
  Gh_D13G0192 145 LFQRLFSvEDDEIALLIGMLDYSAKKGADPCADMNEFYEFVKKSIHTDVSKVQLMDKIRRLKKKFKSNAGKNNKGEDPTFSKPHEQNAFELSKQIWGK 242
                  69****96789*************************************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-32146241IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAPKRSNPIE VPPAASSSEE DEEVTSSEEV DEGSSTEEDP KTQSTPMSQK SPPPRKLETA  60
TPAIVKEGSD ESGSDSESDT AAQIAIATEP RCNKSLASSS KRPGESELDA KEAKRPKKKV  120
GEEGMATAPV VEGVKKTGKD AKKLLFQRLF SVEDDEIALL IGMLDYSAKK GADPCADMNE  180
FYEFVKKSIH TDVSKVQLMD KIRRLKKKFK SNAGKNNKGE DPTFSKPHEQ NAFELSKQIW  240
GKEGISGKVE SSTAKSNGKA KGNNKAEVAV KAELLSSSDK KIDDAVSVEV NEVVSKSSSN  300
FLDKKFSLSD LEEAVVKVGL DMVDGEKKAA LEAKWMKLQV AQLEAYARRT EFVAEQAKLL  360
LKYYKSEDK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7512650.0JQ751265.1 Gossypium hirsutum GL1-enhancer binding protein (GeBP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465288.10.0PREDICTED: mediator-associated protein 1-like isoform X1
TrEMBLA0A0D2W2020.0A0A0D2W202_GOSRA; Uncharacterized protein
STRINGGorai.013G021200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.18e-31DNA-binding storekeeper protein-related transcriptional regulator