PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0198
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 228aa    MW: 25606.2 Da    PI: 9.7014
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0198genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000135476123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  Gh_D13G0198 54 YTCSFCWREFKSAQALGGHMNVH 76
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.85E-65180No hitNo description
SMARTSM003550.00855476IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9075481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEQAQYLMLM KRRQFLKSHF QVSINSLSET WEEKAFAEDA AGSLGGCIWP PRSYTCSFCW  60
REFKSAQALG GHMNVHRRDR AKLKQSLSPK NEVVSNQNQN PNPLKPSDPK SPHPAADLAH  120
SFSSSRVSAS SKNFGTCSFV QGQHQGLLSS YDDGVINCKR RKIAASTTLP FLVPKEKCYS  180
SLQWQVLGVK PAVAGSMEEL DLELRLGAQP KVKSWNMDQR DCKRMELL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-124976229superman protein
2l1o_A3e-124976229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17684RRDRAKLKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016702118.11e-171PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A1U8KM931e-170A0A1U8KM93_GOSHI; probable transcriptional regulator RABBIT EARS
TrEMBLA0A2P5SID31e-170A0A2P5SID3_GOSBA; Uncharacterized protein
STRINGGorai.013G022000.11e-170(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-29C2H2 family protein