PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G0203

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 279aa MW: 30803.8 Da PI: 9.1389

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G0203	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.2e-38	69	129	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +ekalkcprC+st+tkfCy+nnyslsqPryfCk+C+ryWt+GGalrnvP+Ggg+r nk+s+ Gh_D13G0203 69 PEKALKCPRCESTDTKFCYFNNYSLSQPRYFCKTCKRYWTRGGALRNVPIGGGCRTNKRSK 129 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-33	53	127	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-32	71	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	73	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MVFSFVPLID PLNWQQPPTH QQDQVFTKDN HHHIHNPQLP PPPPAGSSVG INRPGSMAER 60 ARLANMQKPE KALKCPRCES TDTKFCYFNN YSLSQPRYFC KTCKRYWTRG GALRNVPIGG 120 GCRTNKRSKG SKPTKSPSIG QMNPTPLQFP LLLHPLHYLG DYISVGTRAS SNMEFQIGNS 180 SHGDGSMLTN GLVQQFPFLT GLETPTGLYP LGSEGVEASS YGVHHQLRSK PLESWIAQLE 240 AVSDQYWAGG GGGRGGDAWT DLSGDFVYKS FLPPNPVQY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016665563.1	0.0	PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBL	A0A1U8HNK9	0.0	A0A1U8HNK9_GOSHI; dof zinc finger protein DOF3.6-like
TrEMBL	A0A2P5SID8	0.0	A0A2P5SID8_GOSBA; Uncharacterized protein
STRING	Gorai.013G022500.1	1e-179	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24290	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	2e-44	OBF-binding protein 3