PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0210
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 163aa    MW: 18312.8 Da    PI: 7.862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0210genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00134264123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C++ F++   L  H  +H
  Gh_D13G0210 42 FECKTCNRQFNSFQALGGHRASH 64
                 89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.19E-940111No hitNo description
PfamPF139127.9E-134166IPR007087Zinc finger, C2H2
SMARTSM003550.214264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0764269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139126.2E-1088113IPR007087Zinc finger, C2H2
SMARTSM003550.589111IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.45289113IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MKRSFLNREE NNLALANCLM LLSQGGDQYE HAEIDTNPSR VFECKTCNRQ FNSFQALGGH  60
RASHKKPRLV EVDSEMSENQ ASPAKPKTHE CSICGLEFAI GQALGGHMRR HRGVLSENQH  120
EEPIVKKSNS RRVLCLDLNL TPLENDLELF KLGKGAPTIN FLL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016667696.11e-118PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A1U8HNU71e-117A0A1U8HNU7_GOSHI; zinc finger protein ZAT11-like
TrEMBLA0A2P5SIC61e-117A0A2P5SIC6_GOSBA; Uncharacterized protein
STRINGGorai.013G023300.11e-115(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.19e-36C2H2 family protein