PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G0287

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 250aa MW: 27100.3 Da PI: 6.7845

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G0287	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Gh_D13G0287 91 FSCNYCRRKFYSSQALGGHQNAH 113 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.88E-6	89	119	No hit	No description
PROSITE profile	PS50157	11.385	91	118	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	93	113	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MTLPNLGLES ENDSNASSQV ASNISAQEAS TDPSKDTTTT TSCLSNPVKV QPDPGSVSLD 60 LTLHFSANDA EMKGATGETM GINTLSTPRV FSCNYCRRKF YSSQALGGHQ NAHKRERTMA 120 KRAMRMGLLS DRYTSLASLP LHGSAFRSLG IKAHSAMHQG MLPSSQRPVD TRSGARFDQG 180 CFGMPIFMED EEVDLYWPGS FRQVNEERVG SNQAMELGQN PTQSSNIGFI AMATPPRADA 240 SSQLDLTLKL

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	73849121	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016706172.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_016706174.1	0.0	PREDICTED: zinc finger protein 4-like
Swissprot	Q39263	6e-42	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A1U8KUL2	0.0	A0A1U8KUL2_GOSHI; zinc finger protein 4-like
TrEMBL	A0A2P5QVW0	0.0	A0A2P5QVW0_GOSBA; Uncharacterized protein
STRING	Gorai.013G031600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6672	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	3e-44	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]