PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G0293

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

DBB

Protein Properties

Length: 212aa MW: 23278.1 Da PI: 6.2961

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G0293	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.9	8.8e-08	3	33	4	34
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +++ +++fC ++ lC++C ++ H Gh_D13G0293 3 TICDVCDSAAAIIFCAADEAALCRSCDEKVH 33 68**************************998 PP
2	zf-B_box	28.9	2.4e-09	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H Gh_D13G0293 52 NVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91 789***************************9995544455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.082	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	4.7E-8	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	9.59E-6	3	45	No hit	No description
Pfam	PF00643	5.3E-6	3	41	IPR000315	B-box-type zinc finger
SMART	SM00336	5.8E-10	51	96	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.015	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.2E-7	52	85	IPR000315	B-box-type zinc finger
CDD	cd00021	3.54E-7	54	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MRTICDVCDS AAAIIFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SNVPRCDICE 60 NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGR LEEPGLQPFS 120 PNEVRKDLNQ QSKLAVRENR QNHGVSHVPL HDDNAKADGK VGNELIDLNA RPQQVQGKAS 180 INQEQAMDVS SGNNHDTTSG IPDGSFKQEP EK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.4045	0.0	boll\| leaf\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016704931.1	1e-157	PREDICTED: B-box zinc finger protein 19-like
Refseq	XP_016704932.1	1e-157	PREDICTED: B-box zinc finger protein 19-like
Refseq	XP_016704933.1	1e-157	PREDICTED: B-box zinc finger protein 19-like
Swissprot	C0SVM5	1e-83	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A1U8KR34	1e-156	A0A1U8KR34_GOSHI; B-box zinc finger protein 19-like
STRING	Gorai.013G032300.1	1e-154	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2168	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	9e-73	DBB family protein