PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0299
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 313aa    MW: 34147 Da    PI: 6.8553
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0299genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.92.8e-18231264134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs+C++ kTp+WR gp g ktLCnaCG++y++ +
  Gh_D13G0299 231 CSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGR 264
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.0E-774312IPR016679Transcription factor, GATA, plant
SMARTSM004012.7E-14225279IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-14227288No hitNo description
PROSITE profilePS5011411.332229261IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14229262IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.12E-14230279No hitNo description
PROSITE patternPS003440231256IPR000679Zinc finger, GATA-type
PfamPF003203.8E-16231264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDLRALKSSV RELTMQNTHH VFDDSLVMNV MNGAVAGEDF SIDCFLDFNN GEFEEGSVEE  60
EEKNSVSTSY QQRVADDDSN SNSTSFTLSV PDDEIAGLEW VSHFVDESVP EIPLPCPVFK  120
QETDNHAGTR FEAETGPVFV KTPSFSSSVP SKARSKRSKP TVPTWSVGSL PISESSSSTA  180
SSSSTCSGSS MTSTELANGF RVPPTKKQKK KPVAVQGSGG LSSGNPFQRR CSHCQVQKTP  240
QWRTGPLGAK TLCNACGVRY KSGRLFPEYR PACSPTFSGD LHSNSHRKVL EMRKRKELAV  300
NDSVESTRLV PSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.91100.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618282.10.0PREDICTED: GATA transcription factor 5-like
TrEMBLA0A1U8K5400.0A0A1U8K540_GOSHI; GATA transcription factor
STRINGGorai.013G032900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-50GATA transcription factor 5