PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0360
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 151aa    MW: 17598.6 Da    PI: 10.7747
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0360genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.7e-11261081594
                  -EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EE CS
           B3  15 rlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld.grsefelvv 94 
                  rl++p k ++ +   +   e++++    d  g++W++ l+   ++ r    vl++GW  +v+a+gL+ +D +v++ d ++ +++ ++
  Gh_D13G0360  26 RLSFPMKGLKVFqflE--GENKMEFEAADGIGKRWRFGLSK--RKTRhpkPVLSSGWLAYVRAKGLQIKDRFVLYGDlDNLSTKKRF 108
                  5888888886667443..33556777778888*******55..44444589************************653334444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-139114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-101098IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-1013111No hitNo description
PfamPF023627.7E-926106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MGMPPLYSKT NEIFSKDLSE TDVGVRLSFP MKGLKVFQFL EGENKMEFEA ADGIGKRWRF  60
GLSKRKTRHP KPVLSSGWLA YVRAKGLQIK DRFVLYGDLD NLSTKKRFRV RAQRKVRRPI  120
KLFGKEIHVE EVWVDVEELE GLKREVSRSI L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461286.17e-91PREDICTED: uncharacterized protein LOC105781297
TrEMBLA0A2P5RSR51e-103A0A2P5RSR5_GOSBA; Uncharacterized protein
STRINGGorai.013G039500.13e-90(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2224545