PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0369
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 408aa    MW: 45455.9 Da    PI: 7.2276
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0369genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.56.2e-33260315156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  Gh_D13G0369 260 KQRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 315
                  79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.494257317IPR017930Myb domain
SuperFamilySSF466894.61E-18257318IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-29259318IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-27260315IPR006447Myb domain, plants
PfamPF002496.4E-8262313IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGLVPPELSL DFRPNFVPKT ITNFLREVSL VGNVSDKVSK LDTFVKGLEE EMKKIDAFKR  60
ELPLCMLLLN DAILVLKEES TQCMARNVEP VLEEFIPLKN KEEDNHSEED GSLITTKKEE  120
DCNNDCNNNM DKKNWMSSVQ LWNIDDDYCS SDHKLDTKRN DEDPCKSRGG GGRGFMPFKA  180
NLGFAVRKEE KQEIPVHGLT LSTPGIKNLK EESSSTGSRS SCSRAVPFSA TNARSSFRSA  240
PPVGPSNHLQ QHQQQQTGRK QRRCWSPELH RRFVNALQQL GGSQVATPKQ IRELMQVDGL  300
TNDEVKSHLQ KYRLHTRRLP ATTTTTTPAN QSGLVLGGGH AWMCQDQFGE SSKGSSSQSG  360
SPQGPLQLAT NTGGTSTTGC ESMEDDEDAK SECYSWKNHV QKPRKNNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-14260313154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14260313154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14260313154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14260313154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.200940.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9646122e-60JX964612.1 Gossypium hirsutum clone NBRI_TRANS-881 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464423.10.0PREDICTED: uncharacterized protein LOC105783481
TrEMBLA0A0D2V8Z70.0A0A0D2V8Z7_GOSRA; Uncharacterized protein
TrEMBLA0A2P5QLJ00.0A0A2P5QLJ0_GOSBA; Uncharacterized protein
STRINGGorai.013G040600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145351021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.19e-47G2-like family protein