PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0636
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 434aa    MW: 48659.4 Da    PI: 5.0886
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0636genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.41.9e-91444302374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlt 97 
                  ++lLl+cA a++++d +laq++++ l++ as  gd++qRl+a f++AL +r +r +++ ++    s  +     + +++++l  ++++ P+++f++ +
  Gh_D13G0636  44 EKLLLHCASALENNDVTLAQQVMWVLNNVASTVGDTNQRLTAWFLRALISRASRVCPTSMNFNGGSMFQ----RRLMTVTELvgYVDLIPWHRFGFCA 137
                  689***************************************************777777666555554....333333344559************* PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl........... 181
                   N aI +aveg  +vHi+Df+i++++QWp+L++aLa+RpegppslRiT+ +   ++    + + ee+g+rLa+fA+  +vpfef+v            
  Gh_D13G0636 138 SNGAIFKAVEGYGKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPSCRPQVpplLNVSKEEVGHRLANFAKFRDVPFEFHVKdddpclsnetf 235
                  ************************************************9887555578889999*********************8899999898886 PP

         GRAS 182 ...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      ++ l++l+ ++L+++ +Eal++n++  l +l de+   +   rd++L+++k+l+P+++vvv++++d++++s+  r++ +++y +  fd+le+ l
  Gh_D13G0636 236 atqFESLLTQLTRSQLDLRDDEALVINCQNWLRYLSDETKGNTTtVRDAFLDVIKGLNPRIIVVVDEDCDLSASSLSSRITTCFNYLWIPFDALETFL 333
                  665555677779999*********************9987666559**************************************************** PP

         GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  p++s++r  +E   +g +i+n+v  eg++r+er e+  k ++r+++aGF ++p+ e++ +++k+ll +++  g+ ++ e++ lvl+Wk+++ v+++aW
  Gh_D13G0636 334 PKDSRQRLEYESD-IGHKIENIVGFEGFRRTERLESGVKLSQRINDAGFVSLPFCEDTINEVKSLLDEHA-SGWGMKREEDMLVLTWKGHNSVFATAW 429
                  *************.********************************************************.889999999****************** PP

         GRAS 374 r 374
                  +
  Gh_D13G0636 430 T 430
                  6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.77917411IPR005202Transcription factor GRAS
PfamPF035146.4E-8944430IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MKTEVRGNGG SVSLQNPSLF NTPLDPITGA LKGCLGSLDG ACIEKLLLHC ASALENNDVT  60
LAQQVMWVLN NVASTVGDTN QRLTAWFLRA LISRASRVCP TSMNFNGGSM FQRRLMTVTE  120
LVGYVDLIPW HRFGFCASNG AIFKAVEGYG KVHILDFSIT HCMQWPTLID ALAKRPEGPP  180
SLRITVPSCR PQVPPLLNVS KEEVGHRLAN FAKFRDVPFE FHVKDDDPCL SNETFATQFE  240
SLLTQLTRSQ LDLRDDEALV INCQNWLRYL SDETKGNTTT VRDAFLDVIK GLNPRIIVVV  300
DEDCDLSASS LSSRITTCFN YLWIPFDALE TFLPKDSRQR LEYESDIGHK IENIVGFEGF  360
RRTERLESGV KLSQRINDAG FVSLPFCEDT INEVKSLLDE HASGWGMKRE EDMLVLTWKG  420
HNSVFATAWT ELED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-581642965472Protein SHORT-ROOT
5b3h_B2e-581642911418Protein SHORT-ROOT
5b3h_E2e-581642911418Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465420.10.0PREDICTED: scarecrow-like protein 32
RefseqXP_016703843.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A0D2W3P60.0A0A0D2W3P6_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KS770.0A0A1U8KS77_GOSHI; scarecrow-like protein 32
TrEMBLA0A2P5VP810.0A0A2P5VP81_GOSBA; Uncharacterized protein
STRINGGorai.013G072100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17642910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-123GRAS family protein