PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G1072

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 217aa MW: 24523.2 Da PI: 5.6826

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G1072	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.8	6.4e-47	17	130	1	115
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdee++++yL +kv ++++++ +i e+d++k+ePwdLp k+k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkdke+++ kg Gh_D13G1072 17 LPPGFRFHPTDEEIITHYLLEKVMNSNFSA-AAIGEADLNKSEPWDLPDKAKMGEKEWYFFCQRDRKYPTGMRTNRATQAGYWKATGKDKEIFKGKGC 113 79***********************999.78***********99999*************************************9* PP NAM 99 lvglkktLvfykgrapk 115 lvg+kktLvfykgrap Gh_D13G1072 114 LVGMKKTLVFYKGRAPX 130 **************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-49	12	130	IPR003441	NAC domain
PROSITE profile	PS51005	43.092	17	161	IPR003441	NAC domain
Pfam	PF02365	2.0E-23	18	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MEDAIVVNQR HQELMELPPG FRFHPTDEEI ITHYLLEKVM NSNFSAAAIG EADLNKSEPW 60 DLPDKAKMGE KEWYFFCQRD RKYPTGMRTN RATQAGYWKA TGKDKEIFKG KGCLVGMKKT 120 LVFYKGRAPX TGSLRTEDEA SIRALAGNYS GDHIGQRQCN KVEQFSSNQS MVSPSQDTGH 180 STEINNNEIS SVISKSFGLG SIDPYDDIED LACLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-42	15	129	18	131	NAC domain-containing protein 19
3swm_B	2e-42	15	129	18	131	NAC domain-containing protein 19
3swm_C	2e-42	15	129	18	131	NAC domain-containing protein 19
3swm_D	2e-42	15	129	18	131	NAC domain-containing protein 19
3swp_A	2e-42	15	129	18	131	NAC domain-containing protein 19
3swp_B	2e-42	15	129	18	131	NAC domain-containing protein 19
3swp_C	2e-42	15	129	18	131	NAC domain-containing protein 19
3swp_D	2e-42	15	129	18	131	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3293	0.0	ovule\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU706340	0.0	EU706340.1 Gossypium hirsutum NAC domain protein NAC6 (NAC6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465518.1	1e-92	PREDICTED: NAC domain-containing protein 100
Swissprot	Q9FK44	3e-75	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0D2TZN7	2e-91	A0A0D2TZN7_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5QPY6	2e-91	A0A2P5QPY6_GOSBA; Uncharacterized protein
STRING	Gorai.013G118000.1	4e-92	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2269	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	4e-78	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]