PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G1078

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 205aa MW: 23289.3 Da PI: 7.5838

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G1078	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.5e-16	5	50	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd ll+++++++G g W++I+ g++R++k+c++rw++yl Gh_D13G1078 5 AWTEEEDYLLKKCIERYGEGKWHRIPVLAGLKRCRKSCRLRWLNYL 50 7*******************************************97 PP
2	Myb_DNA-binding	39.5	1.3e-12	56	109	1	47
TSSS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrwqky 47 rg++ +eE l+++++ +lG++ W++Ia +++ gRt++++k++w+ + Gh_D13G1078 56 RGSFAAEEVNLIINLHSLLGNRhafhsiklMWSLIAGRLP-GRTANDVKNYWNCH 109 78999*********************************.*********977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.192	1	54	IPR017930	Myb domain
SMART	SM00717	3.5E-13	2	52	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.2E-21	5	57	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.14E-23	5	106	IPR009057	Homeodomain-like
Pfam	PF00249	6.9E-15	5	50	IPR001005	SANT/Myb domain
CDD	cd00167	7.25E-11	5	50	No hit	No description
PROSITE profile	PS51294	12.488	55	114	IPR017930	Myb domain
SMART	SM00717	3.6E-8	55	112	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-10	56	107	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.7E-21	58	115	IPR009057	Homeodomain-like
CDD	cd00167	1.75E-7	61	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MGGVAWTEEE DYLLKKCIER YGEGKWHRIP VLAGLKRCRK SCRLRWLNYL RPNIKRGSFA 60 AEEVNLIINL HSLLGNRHAF HSIKLMWSLI AGRLPGRTAN DVKNYWNCHL SKKLNSAPQS 120 EDDQTAAATT TASMKPRRPA HVSPNTQPET SVWAPFHDVQ VNQQGQEVAA EEPGTLVGDL 180 EFDEGGSSKW WDDFIFDMDL WTASL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-19	6	116	10	110	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016703354.1	1e-137	PREDICTED: transcription factor MYB114-like
TrEMBL	A0A1U8KRM9	1e-135	A0A1U8KRM9_GOSHI; transcription factor MYB114-like
STRING	Gorai.013G118300.1	1e-134	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17352	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	9e-52	myb domain protein 113