PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1101
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 693aa    MW: 76484.1 Da    PI: 6.5378
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1101genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.21e-15409446340
          TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  +k+CnCk+skClk+YC+Cfaag +C e C+C+dC+Nk 
  Gh_D13G1101 409 CKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQDCFNKP 446
                  79**********************************96 PP
2TCR52.31.1e-16493532140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+gCnCk+s+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ 
  Gh_D13G1101 493 RHKRGCNCKRSSCLKKYCECFQAGVGCSLSCRCEGCKNSF 532
                  589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-17407448IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.605408533IPR005172CRC domain
PfamPF036384.8E-11410445IPR005172CRC domain
SMARTSM011141.2E-17493534IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-12495531IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MDTPDKTQIT PTSNLCKFED SPVSKYIDSL SPIELAKSRQ TDNGFSSLAF LSPSSLFPSP  60
QITCHRESRF SVKRHHFLEP LNSRVARSGH ESNTSEEASK VDEHLGCPNN DSSSKETSSD  120
QVDEQPNLAT DLPRTLKYDC RSPDGDFEPC DEILKKTNVE VAGQERSPFQ CNRDKWEERQ  180
QSFQNERNLR KICGIKRSEE SAGSDWVAVL SDVADMLTMN SSIIHENTDG QDWRTTNPGT  240
TSFISNILQF PLDKANNSEN AESGDPSGSC KQSESGEPVM DQMHGILSTC LPDELVVNDS  300
GLKKDDKEGN CNQSNHQQFS IRRRCLVFEK SPGFGLHLNS LPNIPKGQSP LSKSTLSSMN  360
RGEVPDDNKG VVTENSYEMP ATFGGNEADH NSPEKKRQKF ELVEESVACK RCNCKRSKCL  420
KLYCDCFAAG LYCIEPCSCQ DCFNKPIHEN VVLETRRQIE SRNPLAFAPK VIRTTNGVSD  480
SMGDINKTPA SARHKRGCNC KRSSCLKKYC ECFQAGVGCS LSCRCEGCKN SFGRKDGGCE  540
SESDGDNLEA CEKNASEKSS HDTVISKGQE HPNLSVPSPD ISRLPFAYTG KLAAFFPHSI  600
KSSPQLCSTQ EQGSSDTSSC KPKLESNLDG IPENGTPEIP KHKCFTLVSN PTSPNCKRVF  660
STPNHDSTSS STKWCSRKLI LRSVPSFPSF SPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-2041053012120Protein lin-54 homolog
5fd3_B7e-2041053012120Protein lin-54 homolog
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818422e-33LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132592e-33LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703703.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A1U8KRS40.0A0A1U8KRS4_GOSHI; protein tesmin/TSO1-like CXC 2 isoform X1
STRINGGorai.013G121300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17096510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.13e-94Tesmin/TSO1-like CXC domain-containing protein