PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G1149

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 238aa MW: 25859.1 Da PI: 8.4714

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G1149	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs++ L H++ H Gh_D13G1149 84 FTCGFCSKQFSTSQALGGHQNAH 106 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.16E-6	81	111	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.9E-5	82	110	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.676	84	111	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
METLCVKLPC SSDTCSISPP SNGETQNMMN ATKLKEKASV DDVHEHPKPS GFHLPLGGES 60 VELRLSSMIS SPKPQQQSSK GRAFTCGFCS KQFSTSQALG GHQNAHKQER AIAKRRKEMD 120 VGALPPQQYP FYSYSTLSQG SLYGSFNRSL GIKMDAMIQK PPISGYPWNS LGYRFGHGGI 180 VMDGLQSQKS SVLPTPASTI APKKWTSSID FHVSASEGYH RNDAADDDDS GLDLSLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016704275.1	1e-178	PREDICTED: zinc finger protein KNUCKLES-like
TrEMBL	A0A1U8KPB1	1e-177	A0A1U8KPB1_GOSHI; zinc finger protein KNUCKLES-like
STRING	Gorai.013G126700.1	1e-176	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8738	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	5e-21	C2H2 family protein