PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1159
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 147aa    MW: 15843.2 Da    PI: 10.4906
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1159genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.16.8e-20943135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++
  Gh_D13G1159  9 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRR 43
                 ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.492339IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-16360IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-14543No hitNo description
Gene3DG3DSA:3.30.50.101.8E-16743IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.54E-13845No hitNo description
PROSITE patternPS003440934IPR000679Zinc finger, GATA-type
PfamPF003207.8E-18943IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSESNKKFCT DCKTTKTPLW RGGPAGPKSL CNACGIRYRK KRRAMLGLNK GIEKKKKEIS  60
HSPSSDSSSS SAPTNDGGGE NLSANLNGLS ESVKMRLFAL GSEVLLQTSS SLSGVVKKQR  120
CQRRRKLGEE EQAAISLMAL SCDTVFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14056KRRAMLGLNKGIEKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.123640.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465413.11e-103PREDICTED: GATA transcription factor 15-like
RefseqXP_016703655.11e-103PREDICTED: GATA transcription factor 15-like
TrEMBLA0A0D2U0E81e-102A0A0D2U0E8_GOSRA; Uncharacterized protein
TrEMBLA0A0D2VEK11e-102A0A0D2VEK1_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KMJ11e-102A0A1U8KMJ1_GOSHI; GATA transcription factor 15-like
STRINGGorai.013G127900.11e-102(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16911712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-24GATA transcription factor 15