PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1327
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 317aa    MW: 36012.2 Da    PI: 4.8431
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1327genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.15.8e-5661331128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rdkky++g+r+nrat+ gyWkatgkd++v + +
  Gh_D13G1327   6 LPPGFRFHPTDEELVAYYLDRKISGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDKKYPNGSRTNRATRGGYWKATGKDRAVQT-S 101
                  79****************************.99**************96435566888*************************************9.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++vg+kktLv+y+grap+g +t+Wvmheyrl
  Gh_D13G1327 102 KAVVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                  99****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-643157IPR003441NAC domain
PROSITE profilePS5100560.7376157IPR003441NAC domain
PfamPF023653.7E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAPMTLPPGF RFHPTDEELV AYYLDRKISG RTIELEIIPE VDLYKCEPWD LPDKSFLPSK  60
DMEWYFYSPR DKKYPNGSRT NRATRGGYWK ATGKDRAVQT SKAVVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLLHSASPT APSSLKDSYS LCRIFKKNIQ IPKTKEAAVE NNQSFGDEIS  180
RGREAEVEDE NFNTSSSDVT QGTPNETGVA DEYQPPFTSD EANSSANLSS LGPDISSDPF  240
QIPSYTNLHY QAPYPPLELE DFPQINIISE TKASKAEIID EYMMYDKCKD YMNGSLEEIF  300
SLCASQDNSM PPLSMHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-58115812166NO APICAL MERISTEM PROTEIN
1ut4_B5e-58115812166NO APICAL MERISTEM PROTEIN
1ut7_A5e-58115812166NO APICAL MERISTEM PROTEIN
1ut7_B5e-58115812166NO APICAL MERISTEM PROTEIN
3swm_A5e-58115815169NAC domain-containing protein 19
3swm_B5e-58115815169NAC domain-containing protein 19
3swm_C5e-58115815169NAC domain-containing protein 19
3swm_D5e-58115815169NAC domain-containing protein 19
3swp_A5e-58115815169NAC domain-containing protein 19
3swp_B5e-58115815169NAC domain-containing protein 19
3swp_C5e-58115815169NAC domain-containing protein 19
3swp_D5e-58115815169NAC domain-containing protein 19
4dul_A5e-58115812166NAC domain-containing protein 19
4dul_B5e-58115812166NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8471980.0KC847198.1 Gossypium hirsutum NAC domain protein NAC21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313743.10.0NAC domain-containing protein 86-like
RefseqXP_012465563.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotQ9FFI53e-86NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A1U8IE280.0A0A1U8IE28_GOSHI; NAC domain-containing protein 86-like
STRINGGorai.013G146300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81232640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-112NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]