PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1526
Common NameNAC10
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 349aa    MW: 38896.7 Da    PI: 8.644
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1526genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1739.1e-54151421128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+r++ky++g r+nra++sgyWkatg+dk+vl++ ++
  Gh_D13G1526  15 LPPGFRFHPTDEELVVHYLKKKATSAPLPV-AIIAEVDLYKFDPWELPAKATFGEREWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLNSkGT 111
                  79****************************.88***************988899**************************************998677 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kk Lvfy g+ pkg kt+W+mheyrl
  Gh_D13G1526 112 QKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
                  88***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-657176IPR003441NAC domain
PROSITE profilePS5100562.03315176IPR003441NAC domain
PfamPF023653.0E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MESTDSSTVS RQPNLPPGFR FHPTDEELVV HYLKKKATSA PLPVAIIAEV DLYKFDPWEL  60
PAKATFGERE WYFFSPRERK YPNGARPNRA ATSGYWKATG TDKPVLNSKG TQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLPDNKNNNK PPGCDLGYKK NSLRLDDWVL CRIYKKNNTN  180
RPLGYEKDEA IDDMGGPVPT SMSIGSLQFQ TKGTSCGTFL ENHEHNLFDG MLGSDGINNN  240
GSMSHLGCCS SSKPDLSMVN PLKRRTVPSL YWTDEDTASP STSKTFHGDH SNDGSLEKPD  300
TNGSNSIATL LSQLPQTPHL QQQTMVGSME DGIFRPSYQL PGLNWYTLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-7211799171NAC domain-containing protein 19
3swm_B3e-7211799171NAC domain-containing protein 19
3swm_C3e-7211799171NAC domain-containing protein 19
3swm_D3e-7211799171NAC domain-containing protein 19
3swp_A3e-7211799171NAC domain-containing protein 19
3swp_B3e-7211799171NAC domain-containing protein 19
3swp_C3e-7211799171NAC domain-containing protein 19
3swp_D3e-7211799171NAC domain-containing protein 19
3ulx_A3e-721417814170Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}.
UniprotTISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9141410.0JQ914141.1 Gossypium hirsutum NAC domain protein 10 (NAC10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314078.10.0NAC transcription factor 56-like
SwissprotQ9LD441e-124NAC56_ARATH; NAC transcription factor 56
TrEMBLU5IJH20.0U5IJH2_GOSHI; NAC domain protein 10
STRINGGorai.013G167100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-121NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Shah ST, et al.
    Isolation and expression profiling of GhNAC transcription factor genes in cotton (Gossypium hirsutum L.) during leaf senescence and in response to stresses.
    Gene, 2013. 531(2): p. 220-34
    [PMID:24036432]