PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1641
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 453aa    MW: 49483.8 Da    PI: 8.171
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1641genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22e-115682127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C+++ rtG C++G++C+F+H+p
  Gh_D13G1641 56 PGEPDCSYYIRTGLCRFGATCHFNHPP 82
                 5789*********************97 PP
2zf-CCCH31.82.4e-10114133827
                  GGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                  ++++tGtCk+G++CkF+H++
  Gh_D13G1641 114 YYLKTGTCKFGATCKFHHPR 133
                  9*****************96 PP
3zf-CCCH36.58e-12155179327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  + +C +++rtG+Ck+G++CkF+H++
  Gh_D13G1641 155 ETECAYYLRTGQCKFGSTCKFHHPQ 179
                  578********************97 PP
4zf-CCCH38.91.4e-12314340127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f+++tG Ck+G+ CkF+H++
  Gh_D13G1641 314 PGEPECQFYMKTGDCKFGAVCKFHHPR 340
                  5799*********************96 PP
5zf-CCCH40.74e-13360386127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC f++r+G+Ck+G++CkF+H++
  Gh_D13G1641 360 PGEPLCIFYSRYGICKFGPSCKFNHPM 386
                  589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.8E-55582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0335583IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-85782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-56083IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-46181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.906108134IPR000571Zinc finger, CCCH-type
SMARTSM003560.033110133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4114133IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-8114133IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5152179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338152180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6153180IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9155179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4158178IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-6313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173313341IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9315340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5317342IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4319341IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7359386IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727359387IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10361386IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5362386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4364384IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEFSFDAGIP MSRTATAAVP VTEGSSLSPS LNQDAMWQMN LRSSETMESS PYPERPGEPD  60
CSYYIRTGLC RFGATCHFNH PPNRKLAIAA ARMKGEFPER VGQPECQACT YSSYYLKTGT  120
CKFGATCKFH HPRDKAGIAG RVSLNILGYP LRPNETECAY YLRTGQCKFG STCKFHHPQP  180
TNMMVSLRGS PIYQTVPSPT TPGQQSYPGG ITNWSRASFI PNPHWQGPSS YASLILPQGM  240
VSVPGWNAYS GQLASVSSSE NLQQTNVNHQ IHGTPRQNES ATAGSQASFS ELRSSSVPVG  300
VYALQRENVF PERPGEPECQ FYMKTGDCKF GAVCKFHHPR ERVLPAPDCV LSPIGLPLRP  360
GEPLCIFYSR YGICKFGPSC KFNHPMGIFT YNYSPSSPSD APVHCFLGSS SGTAGLNLSS  420
EGLVEAVPTK PRRLSLSKNR QLSPSDDDID AEG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.206591e-102boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016705200.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_016705202.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_016705203.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U8KVY00.0A0A1U8KVY0_GOSHI; zinc finger CCCH domain-containing protein ZFN-like
STRINGGorai.013G179800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1