PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G1717

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 207aa MW: 22444.1 Da PI: 5.6786

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G1717	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.6	1e-08	3	40	24	57
S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +ps++e ++ k l ++ +++V++WFqNrR + ++ Gh_D13G1717 3 NPSKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 40 7888888888888888899****************997 PP
2	Wus_type_Homeobox	62.6	8.1e-21	1	42	24	65
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Gh_D13G1717 1 MVNPSKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 42 78**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.378	1	41	IPR001356	Homeobox domain
Pfam	PF00046	3.0E-6	3	40	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.38E-8	3	47	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.7E-5	17	45	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MVNPSKDETV RIRKLLEKFG SVGDANVFYW FQNRRSRSRR RQRQLQASLA AGSEQRNNNP 60 QAQAVYGGGA IQYDSSGAAA AAAMGFAPPP FPVGSSSSCG VMGDDGFENL LSMSAQMGFQ 120 ELGQSSSVSE TSNLHYQTGF ITVFINGVPT EVPRGPLDVK AMFGEDVDLV HSSGVPIPVN 180 EFGFLLQTLQ HGESYFLVTP FTSLFLY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016725820.1	1e-144	PREDICTED: WUSCHEL-related homeobox 11-like
Swissprot	Q6X7J3	4e-53	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A2P5QE38	1e-149	A0A2P5QE38_GOSBA; Uncharacterized protein
STRING	Gorai.013G196400.1	1e-127	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2819	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	7e-52	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]