PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1853
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 348aa    MW: 40005.3 Da    PI: 9.2225
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1853genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.22.7e-104390154
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                 s++kGV + k +g+W A+++    n  ++r++lg+f t+ +Aa a++ a  k++
  Gh_D13G1853 43 SQFKGVMRQK-NGQWGAQLYT---N--HTRIWLGTFKTEIDAAVAYDSAVIKFR 90
                 789***8666.8******655...3..5**********99********998876 PP
2B381.96.1e-26166263184
                  EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                  f+k+ltpsdv+k++rlv+pkk+a ++              g  k+++++l+++d+  r W+++++y+++s+++v+t+GW++F k+++Lk++D+v F +
  Gh_D13G1853 166 FQKELTPSDVGKLNRLVIPKKYAVKYfppvswtekenadiGDRKTNHVELVFYDKFMRIWKFRYCYWNSSQSFVFTRGWNRFLKEKELKANDVVSFFV 263
                  99**************************************88999**************************************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-1443100IPR016177DNA-binding domain
CDDcd000184.69E-194399No hitNo description
Gene3DG3DSA:3.30.730.102.1E-1644100IPR001471AP2/ERF domain
SMARTSM003808.1E-1744105IPR001471AP2/ERF domain
PROSITE profilePS5103216.8454499IPR001471AP2/ERF domain
PfamPF008472.3E-54488IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.9E-30162270IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-22165261No hitNo description
SuperFamilySSF1019363.66E-26165267IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.111166281IPR003340B3 DNA binding domain
SMARTSM010197.1E-21166281IPR003340B3 DNA binding domain
PfamPF023626.6E-23166263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEEILSVIS SGEANTNSDV SDSISTTHQA NKSQRCGGKG NSSQFKGVMR QKNGQWGAQL  60
YTNHTRIWLG TFKTEIDAAV AYDSAVIKFR PGDTHRNFPR NEITIEEPKL LSHYSAEAAL  120
SMIRDGSSQY KFMDFIKARS RSIKPSIALN SVETYSNEGL ICKQLFQKEL TPSDVGKLNR  180
LVIPKKYAVK YFPPVSWTEK ENADIGDRKT NHVELVFYDK FMRIWKFRYC YWNSSQSFVF  240
TRGWNRFLKE KELKANDVVS FFVCECRKEN EVRRFCMINA NRSRNGGTFV AVNTVHVGIE  300
VDLQLRLGHY YPIDDEKHVQ EEQGSMATAK QKQDDKTEGF KLFGMQIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-2816226110100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147522e-78JX614752.1 Gossypium hirsutum clone NBRI_GE58377 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016669849.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P52e-90RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A2P5WEL20.0A0A2P5WEL2_GOSBA; Uncharacterized protein
STRINGGorai.013G204000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15647617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-92RAV family protein